miRNA display CGI


Results 1 - 20 of 134 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26988 5' -57.3 NC_005809.1 + 42128 0.7 0.29209
Target:  5'- cGCgGCGAGCagaaggacaGCAcuaagaccaacguGGcCCGCGACGUGCu -3'
miRNA:   3'- aUG-CGUUCGg--------CGU-------------UC-GGCGCUGCACG- -5'
26988 5' -57.3 NC_005809.1 + 41603 0.66 0.480739
Target:  5'- gGCgGCcaaguGGCUGCAAGCUGCcGugG-GCa -3'
miRNA:   3'- aUG-CGu----UCGGCGUUCGGCG-CugCaCG- -5'
26988 5' -57.3 NC_005809.1 + 41540 0.67 0.429576
Target:  5'- cAUGCu-GCCGCcGGCCGUGGCcuuccagGUGUu -3'
miRNA:   3'- aUGCGuuCGGCGuUCGGCGCUG-------CACG- -5'
26988 5' -57.3 NC_005809.1 + 40897 0.66 0.522854
Target:  5'- --gGCucGCCGCGAGUCcaaGCGcAgGUGCa -3'
miRNA:   3'- augCGuuCGGCGUUCGG---CGC-UgCACG- -5'
26988 5' -57.3 NC_005809.1 + 40336 0.73 0.197304
Target:  5'- uUGCGCGGccacgcGCCGCcuGCugCGCGugGUGCu -3'
miRNA:   3'- -AUGCGUU------CGGCGuuCG--GCGCugCACG- -5'
26988 5' -57.3 NC_005809.1 + 40202 0.67 0.430548
Target:  5'- cACGCGGGCgucugccacgUGCAGGCCgaauuGCGGCGcacGCg -3'
miRNA:   3'- aUGCGUUCG----------GCGUUCGG-----CGCUGCa--CG- -5'
26988 5' -57.3 NC_005809.1 + 39986 0.66 0.480739
Target:  5'- -uUGCAacagGGCgGCAAGCgCGCGcACGcGCu -3'
miRNA:   3'- auGCGU----UCGgCGUUCG-GCGC-UGCaCG- -5'
26988 5' -57.3 NC_005809.1 + 39750 0.66 0.490077
Target:  5'- cUGCGCGuGGCCGCGagcaccuGGCC-CGACGa-- -3'
miRNA:   3'- -AUGCGU-UCGGCGU-------UCGGcGCUGCacg -5'
26988 5' -57.3 NC_005809.1 + 38711 0.68 0.365751
Target:  5'- cGCGuCAGGaaGCuGGGCgGCGAgGUGCg -3'
miRNA:   3'- aUGC-GUUCggCG-UUCGgCGCUgCACG- -5'
26988 5' -57.3 NC_005809.1 + 38533 0.67 0.420882
Target:  5'- --gGCcuGCCGCucGCCGCGGcCG-GCu -3'
miRNA:   3'- augCGuuCGGCGuuCGGCGCU-GCaCG- -5'
26988 5' -57.3 NC_005809.1 + 38357 1.09 0.000364
Target:  5'- uUACGCAAGCCGCAAGCCGCGACGUGCu -3'
miRNA:   3'- -AUGCGUUCGGCGUUCGGCGCUGCACG- -5'
26988 5' -57.3 NC_005809.1 + 38166 0.67 0.469445
Target:  5'- cUACGacuGCCGCAcgcucaaGGCCcggcGCGACG-GCg -3'
miRNA:   3'- -AUGCguuCGGCGU-------UCGG----CGCUGCaCG- -5'
26988 5' -57.3 NC_005809.1 + 37773 0.66 0.512183
Target:  5'- --aGCAAucCCGCAGcGCCaGcCGGCGUGCu -3'
miRNA:   3'- augCGUUc-GGCGUU-CGG-C-GCUGCACG- -5'
26988 5' -57.3 NC_005809.1 + 37421 0.66 0.522854
Target:  5'- gGCGUGAGCaGCGacGGCCGCcuGCGcgGCa -3'
miRNA:   3'- aUGCGUUCGgCGU--UCGGCGc-UGCa-CG- -5'
26988 5' -57.3 NC_005809.1 + 37371 0.75 0.133854
Target:  5'- gACGUggGCaCGguAGCCGgcaauaucgaCGACGUGCa -3'
miRNA:   3'- aUGCGuuCG-GCguUCGGC----------GCUGCACG- -5'
26988 5' -57.3 NC_005809.1 + 37287 0.66 0.522854
Target:  5'- gACGCcguGGCCGaCAAcGCCGCGAacaucaacaCGgugGCc -3'
miRNA:   3'- aUGCGu--UCGGC-GUU-CGGCGCU---------GCa--CG- -5'
26988 5' -57.3 NC_005809.1 + 37239 0.67 0.460306
Target:  5'- aGCGCGAuGCCau--GCUGCGccACGUGCu -3'
miRNA:   3'- aUGCGUU-CGGcguuCGGCGC--UGCACG- -5'
26988 5' -57.3 NC_005809.1 + 36947 0.68 0.383567
Target:  5'- --aGCAAGCUGC--GCCGCGccACGcGCg -3'
miRNA:   3'- augCGUUCGGCGuuCGGCGC--UGCaCG- -5'
26988 5' -57.3 NC_005809.1 + 36078 0.75 0.129758
Target:  5'- cUACgGCAAGCgcgugaaUGCGGGCCugcGCGGCGUGCa -3'
miRNA:   3'- -AUG-CGUUCG-------GCGUUCGG---CGCUGCACG- -5'
26988 5' -57.3 NC_005809.1 + 35573 0.73 0.186847
Target:  5'- cACGCGAGCCGacccGCuCGCG-CGUGUg -3'
miRNA:   3'- aUGCGUUCGGCguu-CG-GCGCuGCACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.