Results 1 - 20 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26988 | 5' | -57.3 | NC_005809.1 | + | 5319 | 0.79 | 0.075329 |
Target: 5'- -cCGUAGGCCGCGAGCaCGUGGCGcaGCa -3' miRNA: 3'- auGCGUUCGGCGUUCG-GCGCUGCa-CG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 13996 | 0.72 | 0.225697 |
Target: 5'- cACGCu-GCCGguGGCCG--ACGUGCg -3' miRNA: 3'- aUGCGuuCGGCguUCGGCgcUGCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 28444 | 0.72 | 0.231776 |
Target: 5'- aAgGCAAGCCGCuGGCCGaCGAguaCG-GCg -3' miRNA: 3'- aUgCGUUCGGCGuUCGGC-GCU---GCaCG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 12811 | 0.65 | 0.531453 |
Target: 5'- cGCGCAcgcgccuggcagcAGCCG-AGGCCGaguucuaCGGCGUGg -3' miRNA: 3'- aUGCGU-------------UCGGCgUUCGGC-------GCUGCACg -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 18101 | 0.74 | 0.167391 |
Target: 5'- gGCGCAGGCCaagcaGCAGGUCGuCGGCGUc- -3' miRNA: 3'- aUGCGUUCGG-----CGUUCGGC-GCUGCAcg -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 12437 | 0.73 | 0.181804 |
Target: 5'- gACGCGG--UGCAGGCCgGCGGCGUGUu -3' miRNA: 3'- aUGCGUUcgGCGUUCGG-CGCUGCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 16428 | 0.73 | 0.195172 |
Target: 5'- gACgGCGAGCCGCugcgccaaaucuGCCGCGACGaacacaUGCc -3' miRNA: 3'- aUG-CGUUCGGCGuu----------CGGCGCUGC------ACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 40336 | 0.73 | 0.197304 |
Target: 5'- uUGCGCGGccacgcGCCGCcuGCugCGCGugGUGCu -3' miRNA: 3'- -AUGCGUU------CGGCGuuCG--GCGCugCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 26437 | 0.72 | 0.202721 |
Target: 5'- aGCGUGcGGCCGCAguccuacgucggGGCCacCGACGUGCa -3' miRNA: 3'- aUGCGU-UCGGCGU------------UCGGc-GCUGCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 4426 | 0.72 | 0.219754 |
Target: 5'- -uCGUAGGUCGUAcccGGCCGCaacaccgccaGGCGUGCg -3' miRNA: 3'- auGCGUUCGGCGU---UCGGCG----------CUGCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 35485 | 0.72 | 0.207707 |
Target: 5'- cGCGUggGCgCGCcguggguAGGCCGCGGCGUc- -3' miRNA: 3'- aUGCGuuCG-GCG-------UUCGGCGCUGCAcg -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 9266 | 0.72 | 0.201083 |
Target: 5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3' miRNA: 3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 16305 | 0.78 | 0.082206 |
Target: 5'- aUGCGCGAGCCGacCAGGCCGgCGGgugccCGUGCc -3' miRNA: 3'- -AUGCGUUCGGC--GUUCGGC-GCU-----GCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 14870 | 0.72 | 0.213945 |
Target: 5'- gGCgGCGAGCCGCugccGGCgCGCGGCcUGUa -3' miRNA: 3'- aUG-CGUUCGGCGu---UCG-GCGCUGcACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 34341 | 0.76 | 0.112884 |
Target: 5'- aGCGCAAGCUGCugacGGCCGcCGACcaGCg -3' miRNA: 3'- aUGCGUUCGGCGu---UCGGC-GCUGcaCG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 9122 | 0.72 | 0.201083 |
Target: 5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3' miRNA: 3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 33243 | 0.72 | 0.213945 |
Target: 5'- gAUGCc-GCCGCccGCCGCGccgACGUGCg -3' miRNA: 3'- aUGCGuuCGGCGuuCGGCGC---UGCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 35025 | 0.72 | 0.231776 |
Target: 5'- gUACGacccGGCCGCGAGCCa--GCGUGCg -3' miRNA: 3'- -AUGCgu--UCGGCGUUCGGcgcUGCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 37371 | 0.75 | 0.133854 |
Target: 5'- gACGUggGCaCGguAGCCGgcaauaucgaCGACGUGCa -3' miRNA: 3'- aUGCGuuCG-GCguUCGGC----------GCUGCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 4200 | 0.73 | 0.186847 |
Target: 5'- cAUGUuGGCCGCGAGCacguCGCGGCuUGCg -3' miRNA: 3'- aUGCGuUCGGCGUUCG----GCGCUGcACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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