miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26995 3' -54.4 NC_005809.1 + 40792 1.06 0.001548
Target:  5'- aAUCAUCGAACGUAUCGGCCCGACGCGc -3'
miRNA:   3'- -UAGUAGCUUGCAUAGCCGGGCUGCGC- -5'
26995 3' -54.4 NC_005809.1 + 6089 0.72 0.354134
Target:  5'- aGUCGUCGAGCG---CGGCCUuGCGCa -3'
miRNA:   3'- -UAGUAGCUUGCauaGCCGGGcUGCGc -5'
26995 3' -54.4 NC_005809.1 + 39614 0.7 0.44637
Target:  5'- uGUCAUCGAucACGUGcUCGacgugccGCgCGACGCGg -3'
miRNA:   3'- -UAGUAGCU--UGCAU-AGC-------CGgGCUGCGC- -5'
26995 3' -54.4 NC_005809.1 + 15238 0.7 0.477897
Target:  5'- gAUCAUC-AACGgcagaggGUCGGCCUGcCGCa -3'
miRNA:   3'- -UAGUAGcUUGCa------UAGCCGGGCuGCGc -5'
26995 3' -54.4 NC_005809.1 + 24090 0.7 0.4883
Target:  5'- gGUCAUCacgguGGACGaAUCGG-CCGACGCc -3'
miRNA:   3'- -UAGUAG-----CUUGCaUAGCCgGGCUGCGc -5'
26995 3' -54.4 NC_005809.1 + 11386 0.69 0.509416
Target:  5'- cGUCAggcaGAACGUGcgCGGCCCG-UGCu -3'
miRNA:   3'- -UAGUag--CUUGCAUa-GCCGGGCuGCGc -5'
26995 3' -54.4 NC_005809.1 + 15403 0.69 0.540685
Target:  5'- gGUCGUCGAggcauccGCGUG-CGGCgCGugGgGg -3'
miRNA:   3'- -UAGUAGCU-------UGCAUaGCCGgGCugCgC- -5'
26995 3' -54.4 NC_005809.1 + 35840 0.69 0.541775
Target:  5'- -cUAUUGAGCGcggCGGCCCaGCGCa -3'
miRNA:   3'- uaGUAGCUUGCauaGCCGGGcUGCGc -5'
26995 3' -54.4 NC_005809.1 + 2728 0.69 0.541775
Target:  5'- ----cCGGACGcuugagcgCGGCCCGGCGCu -3'
miRNA:   3'- uaguaGCUUGCaua-----GCCGGGCUGCGc -5'
26995 3' -54.4 NC_005809.1 + 26893 0.68 0.563725
Target:  5'- uUCGUCGAuag---CGGCCUGACGUa -3'
miRNA:   3'- uAGUAGCUugcauaGCCGGGCUGCGc -5'
26995 3' -54.4 NC_005809.1 + 42016 0.68 0.563725
Target:  5'- cAUgGUCGAgGCGUGguuuuucagCGGCCCG-CGCa -3'
miRNA:   3'- -UAgUAGCU-UGCAUa--------GCCGGGCuGCGc -5'
26995 3' -54.4 NC_005809.1 + 29079 0.68 0.574789
Target:  5'- gGUCAuccUCGGGCGccgagGUCaGGCCCG-UGCGg -3'
miRNA:   3'- -UAGU---AGCUUGCa----UAG-CCGGGCuGCGC- -5'
26995 3' -54.4 NC_005809.1 + 7153 0.68 0.597057
Target:  5'- cUCAU--GACGUugaagcccaGGCCCGACGCGc -3'
miRNA:   3'- uAGUAgcUUGCAuag------CCGGGCUGCGC- -5'
26995 3' -54.4 NC_005809.1 + 6995 0.68 0.597057
Target:  5'- uUCAcacgcgCGAGCGgGUCGGCUCG-CGUGa -3'
miRNA:   3'- uAGUa-----GCUUGCaUAGCCGGGCuGCGC- -5'
26995 3' -54.4 NC_005809.1 + 18130 0.67 0.630666
Target:  5'- -aCGUCGAACuUGUC-GCCCGGCucGCGc -3'
miRNA:   3'- uaGUAGCUUGcAUAGcCGGGCUG--CGC- -5'
26995 3' -54.4 NC_005809.1 + 38822 0.67 0.641884
Target:  5'- -aCGUCcAGCGg--CGGCaCCGACGUGc -3'
miRNA:   3'- uaGUAGcUUGCauaGCCG-GGCUGCGC- -5'
26995 3' -54.4 NC_005809.1 + 11075 0.67 0.641884
Target:  5'- ---cUCGAACGUGUcCGGgUCGcGCGCGa -3'
miRNA:   3'- uaguAGCUUGCAUA-GCCgGGC-UGCGC- -5'
26995 3' -54.4 NC_005809.1 + 5281 0.67 0.641884
Target:  5'- gAUguUCGcGGCGuUGUCGGCCaCGGCGuCGa -3'
miRNA:   3'- -UAguAGC-UUGC-AUAGCCGG-GCUGC-GC- -5'
26995 3' -54.4 NC_005809.1 + 10850 0.67 0.651974
Target:  5'- gGUgGUCGAgcaggcccuGCGUggcuucgGUCGGCgCGAUGCGc -3'
miRNA:   3'- -UAgUAGCU---------UGCA-------UAGCCGgGCUGCGC- -5'
26995 3' -54.4 NC_005809.1 + 9858 0.67 0.653094
Target:  5'- cGUCGaUGAGCGU---GGCaCCGGCGCGc -3'
miRNA:   3'- -UAGUaGCUUGCAuagCCG-GGCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.