Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26995 | 3' | -54.4 | NC_005809.1 | + | 40792 | 1.06 | 0.001548 |
Target: 5'- aAUCAUCGAACGUAUCGGCCCGACGCGc -3' miRNA: 3'- -UAGUAGCUUGCAUAGCCGGGCUGCGC- -5' |
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26995 | 3' | -54.4 | NC_005809.1 | + | 40326 | 0.66 | 0.712994 |
Target: 5'- -gCGUCGAACugccggccaaGGCCCGGCGUu -3' miRNA: 3'- uaGUAGCUUGcauag-----CCGGGCUGCGc -5' |
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26995 | 3' | -54.4 | NC_005809.1 | + | 9858 | 0.67 | 0.653094 |
Target: 5'- cGUCGaUGAGCGU---GGCaCCGGCGCGc -3' miRNA: 3'- -UAGUaGCUUGCAuagCCG-GGCUGCGC- -5' |
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26995 | 3' | -54.4 | NC_005809.1 | + | 10850 | 0.67 | 0.651974 |
Target: 5'- gGUgGUCGAgcaggcccuGCGUggcuucgGUCGGCgCGAUGCGc -3' miRNA: 3'- -UAgUAGCU---------UGCA-------UAGCCGgGCUGCGC- -5' |
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26995 | 3' | -54.4 | NC_005809.1 | + | 11075 | 0.67 | 0.641884 |
Target: 5'- ---cUCGAACGUGUcCGGgUCGcGCGCGa -3' miRNA: 3'- uaguAGCUUGCAUA-GCCgGGC-UGCGC- -5' |
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26995 | 3' | -54.4 | NC_005809.1 | + | 5281 | 0.67 | 0.641884 |
Target: 5'- gAUguUCGcGGCGuUGUCGGCCaCGGCGuCGa -3' miRNA: 3'- -UAguAGC-UUGC-AUAGCCGG-GCUGC-GC- -5' |
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26995 | 3' | -54.4 | NC_005809.1 | + | 18130 | 0.67 | 0.630666 |
Target: 5'- -aCGUCGAACuUGUC-GCCCGGCucGCGc -3' miRNA: 3'- uaGUAGCUUGcAUAGcCGGGCUG--CGC- -5' |
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26995 | 3' | -54.4 | NC_005809.1 | + | 7153 | 0.68 | 0.597057 |
Target: 5'- cUCAU--GACGUugaagcccaGGCCCGACGCGc -3' miRNA: 3'- uAGUAgcUUGCAuag------CCGGGCUGCGC- -5' |
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26995 | 3' | -54.4 | NC_005809.1 | + | 29079 | 0.68 | 0.574789 |
Target: 5'- gGUCAuccUCGGGCGccgagGUCaGGCCCG-UGCGg -3' miRNA: 3'- -UAGU---AGCUUGCa----UAG-CCGGGCuGCGC- -5' |
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26995 | 3' | -54.4 | NC_005809.1 | + | 42016 | 0.68 | 0.563725 |
Target: 5'- cAUgGUCGAgGCGUGguuuuucagCGGCCCG-CGCa -3' miRNA: 3'- -UAgUAGCU-UGCAUa--------GCCGGGCuGCGc -5' |
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26995 | 3' | -54.4 | NC_005809.1 | + | 15238 | 0.7 | 0.477897 |
Target: 5'- gAUCAUC-AACGgcagaggGUCGGCCUGcCGCa -3' miRNA: 3'- -UAGUAGcUUGCa------UAGCCGGGCuGCGc -5' |
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26995 | 3' | -54.4 | NC_005809.1 | + | 39614 | 0.7 | 0.44637 |
Target: 5'- uGUCAUCGAucACGUGcUCGacgugccGCgCGACGCGg -3' miRNA: 3'- -UAGUAGCU--UGCAU-AGC-------CGgGCUGCGC- -5' |
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26995 | 3' | -54.4 | NC_005809.1 | + | 6995 | 0.68 | 0.597057 |
Target: 5'- uUCAcacgcgCGAGCGgGUCGGCUCG-CGUGa -3' miRNA: 3'- uAGUa-----GCUUGCaUAGCCGGGCuGCGC- -5' |
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26995 | 3' | -54.4 | NC_005809.1 | + | 26893 | 0.68 | 0.563725 |
Target: 5'- uUCGUCGAuag---CGGCCUGACGUa -3' miRNA: 3'- uAGUAGCUugcauaGCCGGGCUGCGc -5' |
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26995 | 3' | -54.4 | NC_005809.1 | + | 35840 | 0.69 | 0.541775 |
Target: 5'- -cUAUUGAGCGcggCGGCCCaGCGCa -3' miRNA: 3'- uaGUAGCUUGCauaGCCGGGcUGCGc -5' |
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26995 | 3' | -54.4 | NC_005809.1 | + | 2728 | 0.69 | 0.541775 |
Target: 5'- ----cCGGACGcuugagcgCGGCCCGGCGCu -3' miRNA: 3'- uaguaGCUUGCaua-----GCCGGGCUGCGc -5' |
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26995 | 3' | -54.4 | NC_005809.1 | + | 15403 | 0.69 | 0.540685 |
Target: 5'- gGUCGUCGAggcauccGCGUG-CGGCgCGugGgGg -3' miRNA: 3'- -UAGUAGCU-------UGCAUaGCCGgGCugCgC- -5' |
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26995 | 3' | -54.4 | NC_005809.1 | + | 11386 | 0.69 | 0.509416 |
Target: 5'- cGUCAggcaGAACGUGcgCGGCCCG-UGCu -3' miRNA: 3'- -UAGUag--CUUGCAUa-GCCGGGCuGCGc -5' |
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26995 | 3' | -54.4 | NC_005809.1 | + | 24090 | 0.7 | 0.4883 |
Target: 5'- gGUCAUCacgguGGACGaAUCGG-CCGACGCc -3' miRNA: 3'- -UAGUAG-----CUUGCaUAGCCgGGCUGCGc -5' |
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26995 | 3' | -54.4 | NC_005809.1 | + | 25183 | 0.66 | 0.719534 |
Target: 5'- --aAUCGaAGCGgugcGUCGGCgCGAUGCa -3' miRNA: 3'- uagUAGC-UUGCa---UAGCCGgGCUGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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