Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26996 | 3' | -57.8 | NC_005809.1 | + | 12239 | 0.66 | 0.480739 |
Target: 5'- cCGGCaacaGCgGCaUCGaacgGAUCGGCGGUAGu -3' miRNA: 3'- -GCCGg---CGaCG-AGUa---CUAGCUGCCGUU- -5' |
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26996 | 3' | -57.8 | NC_005809.1 | + | 7543 | 0.66 | 0.480739 |
Target: 5'- uCGGCgGCgUGCUC--GAUCuGCGGCGc -3' miRNA: 3'- -GCCGgCG-ACGAGuaCUAGcUGCCGUu -5' |
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26996 | 3' | -57.8 | NC_005809.1 | + | 22372 | 0.66 | 0.460306 |
Target: 5'- gCGGgCGCUGC-CAaGAcCGAgGGCGAc -3' miRNA: 3'- -GCCgGCGACGaGUaCUaGCUgCCGUU- -5' |
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26996 | 3' | -57.8 | NC_005809.1 | + | 9736 | 0.66 | 0.450264 |
Target: 5'- gCGGgCGaaCUGCUCGUGGUgGGCGcGCu- -3' miRNA: 3'- -GCCgGC--GACGAGUACUAgCUGC-CGuu -5' |
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26996 | 3' | -57.8 | NC_005809.1 | + | 39580 | 0.66 | 0.450264 |
Target: 5'- -cGCUGCUGCgcuau-UCGGCGGCAAc -3' miRNA: 3'- gcCGGCGACGaguacuAGCUGCCGUU- -5' |
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26996 | 3' | -57.8 | NC_005809.1 | + | 41411 | 0.66 | 0.440343 |
Target: 5'- aCGGCUGUccUUCAccAUCGACGGCGAg -3' miRNA: 3'- -GCCGGCGacGAGUacUAGCUGCCGUU- -5' |
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26996 | 3' | -57.8 | NC_005809.1 | + | 31085 | 0.66 | 0.439358 |
Target: 5'- gGuGCCGCUGCUCAcc-UCGGugcaggcCGGCGAg -3' miRNA: 3'- gC-CGGCGACGAGUacuAGCU-------GCCGUU- -5' |
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26996 | 3' | -57.8 | NC_005809.1 | + | 1329 | 0.67 | 0.431522 |
Target: 5'- aGGCCGacaagcgcgaggaaGC-CGUGGUCGGCGGCc- -3' miRNA: 3'- gCCGGCga------------CGaGUACUAGCUGCCGuu -5' |
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26996 | 3' | -57.8 | NC_005809.1 | + | 4872 | 0.67 | 0.430548 |
Target: 5'- aGGUCGUUGCcCAgcgcggCGACGGCGg -3' miRNA: 3'- gCCGGCGACGaGUacua--GCUGCCGUu -5' |
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26996 | 3' | -57.8 | NC_005809.1 | + | 32929 | 0.67 | 0.430548 |
Target: 5'- aCGGCUGCUGUUCGgccaGggCGAccaCGGCu- -3' miRNA: 3'- -GCCGGCGACGAGUa---CuaGCU---GCCGuu -5' |
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26996 | 3' | -57.8 | NC_005809.1 | + | 10501 | 0.67 | 0.411348 |
Target: 5'- gGGCCG-UGCUCuUGAUCGAacugcugaccgcCGGCc- -3' miRNA: 3'- gCCGGCgACGAGuACUAGCU------------GCCGuu -5' |
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26996 | 3' | -57.8 | NC_005809.1 | + | 17042 | 0.67 | 0.401949 |
Target: 5'- gGGgCGCUGC-CGg---CGGCGGCAAa -3' miRNA: 3'- gCCgGCGACGaGUacuaGCUGCCGUU- -5' |
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26996 | 3' | -57.8 | NC_005809.1 | + | 31188 | 0.67 | 0.401949 |
Target: 5'- gGGCCGCgcacGUUCugccugacGGUCGAgGGCGAa -3' miRNA: 3'- gCCGGCGa---CGAGua------CUAGCUgCCGUU- -5' |
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26996 | 3' | -57.8 | NC_005809.1 | + | 30565 | 0.67 | 0.392688 |
Target: 5'- cCGGCCGCUGUagaugCGgcaGAUgGugGGCu- -3' miRNA: 3'- -GCCGGCGACGa----GUa--CUAgCugCCGuu -5' |
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26996 | 3' | -57.8 | NC_005809.1 | + | 2556 | 0.67 | 0.392688 |
Target: 5'- gGGCCGC-GCUCGUaAUUGcCGGCu- -3' miRNA: 3'- gCCGGCGaCGAGUAcUAGCuGCCGuu -5' |
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26996 | 3' | -57.8 | NC_005809.1 | + | 42195 | 0.67 | 0.383567 |
Target: 5'- uGGCCGC-GCUCA--AUCGGCaGGCc- -3' miRNA: 3'- gCCGGCGaCGAGUacUAGCUG-CCGuu -5' |
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26996 | 3' | -57.8 | NC_005809.1 | + | 36107 | 0.68 | 0.374587 |
Target: 5'- gCGGCgUGCaGUUCcUGcgCGACGGCGAc -3' miRNA: 3'- -GCCG-GCGaCGAGuACuaGCUGCCGUU- -5' |
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26996 | 3' | -57.8 | NC_005809.1 | + | 31372 | 0.68 | 0.374587 |
Target: 5'- aCGGCCggaaGCUGCUCAaggcguUGAacccCGACuGGCAAc -3' miRNA: 3'- -GCCGG----CGACGAGU------ACUa---GCUG-CCGUU- -5' |
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26996 | 3' | -57.8 | NC_005809.1 | + | 25149 | 0.68 | 0.348514 |
Target: 5'- gGGCCaCUGCUCAaGGgcgaCGugGGCGc -3' miRNA: 3'- gCCGGcGACGAGUaCUa---GCugCCGUu -5' |
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26996 | 3' | -57.8 | NC_005809.1 | + | 13014 | 0.69 | 0.331864 |
Target: 5'- aGGCCGCgcaGCgcaGUGG-CGACGGCc- -3' miRNA: 3'- gCCGGCGa--CGag-UACUaGCUGCCGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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