miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26996 5' -53.9 NC_005809.1 + 42262 0.67 0.612253
Target:  5'- gUACgGCaCGCCcugGACG-GAAGaGCGCGCc -3'
miRNA:   3'- -AUGgCG-GCGG---UUGUaCUUCaUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 41541 0.69 0.510695
Target:  5'- aUGCUGCCGCCGGcCGUGGccuuccaGGUguucgACGCuGCg -3'
miRNA:   3'- -AUGGCGGCGGUU-GUACU-------UCA-----UGCG-CG- -5'
26996 5' -53.9 NC_005809.1 + 41482 1.11 0.000676
Target:  5'- cUACCGCCGCCAACAUGAAGUACGCGCg -3'
miRNA:   3'- -AUGGCGGCGGUUGUACUUCAUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 41429 0.7 0.473424
Target:  5'- gACCGCCGCCGuaGCGcGAgcuaacgguuacaccGGgccgAUGCGCg -3'
miRNA:   3'- aUGGCGGCGGU--UGUaCU---------------UCa---UGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 40422 0.66 0.714029
Target:  5'- --aUGCCGCCAGCAaGAccauaaAGUGCcUGCa -3'
miRNA:   3'- augGCGGCGGUUGUaCU------UCAUGcGCG- -5'
26996 5' -53.9 NC_005809.1 + 40416 0.68 0.578258
Target:  5'- aACUGuUCGCCAACGUGuacgGCgGCGCg -3'
miRNA:   3'- aUGGC-GGCGGUUGUACuucaUG-CGCG- -5'
26996 5' -53.9 NC_005809.1 + 40180 0.66 0.714029
Target:  5'- uUGCCGCC-CUGACAa-GGGUACGCacGCg -3'
miRNA:   3'- -AUGGCGGcGGUUGUacUUCAUGCG--CG- -5'
26996 5' -53.9 NC_005809.1 + 39098 0.66 0.669132
Target:  5'- gGCCGUCGaacuCCAGCGcGAacaucGGgGCGCGCg -3'
miRNA:   3'- aUGGCGGC----GGUUGUaCU-----UCaUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 38953 0.68 0.555818
Target:  5'- uUACCaCCGCCAGC--GAAGcaaaAUGCGCg -3'
miRNA:   3'- -AUGGcGGCGGUUGuaCUUCa---UGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 38836 0.69 0.54469
Target:  5'- gUGCCGCCcucaucaaauccGCgAGCAUGAGcggAUGCGCc -3'
miRNA:   3'- -AUGGCGG------------CGgUUGUACUUca-UGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 38544 0.66 0.702903
Target:  5'- cGCCGCgGCCGGCuuUGAAGccuauCGCu- -3'
miRNA:   3'- aUGGCGgCGGUUGu-ACUUCau---GCGcg -5'
26996 5' -53.9 NC_005809.1 + 38335 0.68 0.600889
Target:  5'- cACCGacuaCGCCAucuacgucugcgACgAUGGcacGGUGCGCGCc -3'
miRNA:   3'- aUGGCg---GCGGU------------UG-UACU---UCAUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 37783 0.66 0.725069
Target:  5'- cAgCGCCaGCCGGCGUGc--UGgGCGCa -3'
miRNA:   3'- aUgGCGG-CGGUUGUACuucAUgCGCG- -5'
26996 5' -53.9 NC_005809.1 + 37149 0.67 0.635024
Target:  5'- --aCGCCGCCAuccgcgcCGUGGAgcGUACGCa- -3'
miRNA:   3'- augGCGGCGGUu------GUACUU--CAUGCGcg -5'
26996 5' -53.9 NC_005809.1 + 37050 0.67 0.612253
Target:  5'- aGCUGCCgGCCuggaacuaccaaGGCAccGAGUugGCGCu -3'
miRNA:   3'- aUGGCGG-CGG------------UUGUacUUCAugCGCG- -5'
26996 5' -53.9 NC_005809.1 + 36977 0.68 0.578258
Target:  5'- cACC-CCGCCGAgugggccaaauuCGUGGAGUAUGCcgGCc -3'
miRNA:   3'- aUGGcGGCGGUU------------GUACUUCAUGCG--CG- -5'
26996 5' -53.9 NC_005809.1 + 36472 0.67 0.635024
Target:  5'- cACCGuuG-CGACAUGcgcAAGgcCGCGCu -3'
miRNA:   3'- aUGGCggCgGUUGUAC---UUCauGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 36031 0.69 0.54469
Target:  5'- gGCUGCuacgucaaCGCCAGCAUcGAAcuGUGgGCGCa -3'
miRNA:   3'- aUGGCG--------GCGGUUGUA-CUU--CAUgCGCG- -5'
26996 5' -53.9 NC_005809.1 + 35506 0.67 0.657785
Target:  5'- gGCCGCgGCgu-CAUGAAGUACcuggcCGCc -3'
miRNA:   3'- aUGGCGgCGguuGUACUUCAUGc----GCG- -5'
26996 5' -53.9 NC_005809.1 + 35209 0.67 0.646412
Target:  5'- cGCCGCuggacgaacgaCGCCGAgGUcGAGgcCGCGCu -3'
miRNA:   3'- aUGGCG-----------GCGGUUgUAcUUCauGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.