Results 1 - 20 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26996 | 5' | -53.9 | NC_005809.1 | + | 36977 | 0.68 | 0.578258 |
Target: 5'- cACC-CCGCCGAgugggccaaauuCGUGGAGUAUGCcgGCc -3' miRNA: 3'- aUGGcGGCGGUU------------GUACUUCAUGCG--CG- -5' |
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26996 | 5' | -53.9 | NC_005809.1 | + | 13060 | 0.69 | 0.54469 |
Target: 5'- gUGCgGCCGUCuGCAUGuuGaaUugGCGCu -3' miRNA: 3'- -AUGgCGGCGGuUGUACuuC--AugCGCG- -5' |
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26996 | 5' | -53.9 | NC_005809.1 | + | 17444 | 0.69 | 0.54469 |
Target: 5'- gGCC-CCGCCAGCAUcGAGGccAgGUGCc -3' miRNA: 3'- aUGGcGGCGGUUGUA-CUUCa-UgCGCG- -5' |
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26996 | 5' | -53.9 | NC_005809.1 | + | 36031 | 0.69 | 0.54469 |
Target: 5'- gGCUGCuacgucaaCGCCAGCAUcGAAcuGUGgGCGCa -3' miRNA: 3'- aUGGCG--------GCGGUUGUA-CUU--CAUgCGCG- -5' |
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26996 | 5' | -53.9 | NC_005809.1 | + | 38836 | 0.69 | 0.54469 |
Target: 5'- gUGCCGCCcucaucaaauccGCgAGCAUGAGcggAUGCGCc -3' miRNA: 3'- -AUGGCGG------------CGgUUGUACUUca-UGCGCG- -5' |
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26996 | 5' | -53.9 | NC_005809.1 | + | 38953 | 0.68 | 0.555818 |
Target: 5'- uUACCaCCGCCAGC--GAAGcaaaAUGCGCg -3' miRNA: 3'- -AUGGcGGCGGUUGuaCUUCa---UGCGCG- -5' |
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26996 | 5' | -53.9 | NC_005809.1 | + | 12993 | 0.68 | 0.555818 |
Target: 5'- aACCGcCCGCCGuucuCGUacAGgcCGCGCa -3' miRNA: 3'- aUGGC-GGCGGUu---GUAcuUCauGCGCG- -5' |
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26996 | 5' | -53.9 | NC_005809.1 | + | 25534 | 0.68 | 0.56701 |
Target: 5'- uUGCCGCCGCCGGCA--------GCGCc -3' miRNA: 3'- -AUGGCGGCGGUUGUacuucaugCGCG- -5' |
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26996 | 5' | -53.9 | NC_005809.1 | + | 28280 | 0.68 | 0.56701 |
Target: 5'- gACCGCgCGCUggGACAcggcgcagaacuUGAAGaacucgGCGCGCu -3' miRNA: 3'- aUGGCG-GCGG--UUGU------------ACUUCa-----UGCGCG- -5' |
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26996 | 5' | -53.9 | NC_005809.1 | + | 23357 | 0.69 | 0.543581 |
Target: 5'- -cUCGCCGCCGAUgaacacgGUGgcGUGCcCGCu -3' miRNA: 3'- auGGCGGCGGUUG-------UACuuCAUGcGCG- -5' |
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26996 | 5' | -53.9 | NC_005809.1 | + | 23561 | 0.69 | 0.511779 |
Target: 5'- gGCCGacauCGCCGGCA---GGUGCGgGCg -3' miRNA: 3'- aUGGCg---GCGGUUGUacuUCAUGCgCG- -5' |
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26996 | 5' | -53.9 | NC_005809.1 | + | 15765 | 0.7 | 0.458901 |
Target: 5'- cGuuGCCGCCAAU----GGUGCGaCGCa -3' miRNA: 3'- aUggCGGCGGUUGuacuUCAUGC-GCG- -5' |
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26996 | 5' | -53.9 | NC_005809.1 | + | 22332 | 0.76 | 0.215403 |
Target: 5'- gUGCCGaacgCGCCGaguucuucguACAUGGAGUGCaGCGCg -3' miRNA: 3'- -AUGGCg---GCGGU----------UGUACUUCAUG-CGCG- -5' |
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26996 | 5' | -53.9 | NC_005809.1 | + | 6626 | 0.74 | 0.272092 |
Target: 5'- -uCCGCCGCCAGCuucgcgcgcuuggccGGAGUGucCGCGCu -3' miRNA: 3'- auGGCGGCGGUUGua-------------CUUCAU--GCGCG- -5' |
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26996 | 5' | -53.9 | NC_005809.1 | + | 28554 | 0.72 | 0.368125 |
Target: 5'- uUGCgGCCGCCGGCcaucgcgGCGCGCa -3' miRNA: 3'- -AUGgCGGCGGUUGuacuucaUGCGCG- -5' |
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26996 | 5' | -53.9 | NC_005809.1 | + | 22833 | 0.71 | 0.380846 |
Target: 5'- cGCCGCgcUGCCGACAgccGAcAGcGCGCGCu -3' miRNA: 3'- aUGGCG--GCGGUUGUa--CU-UCaUGCGCG- -5' |
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26996 | 5' | -53.9 | NC_005809.1 | + | 8049 | 0.71 | 0.399521 |
Target: 5'- uUGCCGCCGUC--CAUGAc--GCGCGCc -3' miRNA: 3'- -AUGGCGGCGGuuGUACUucaUGCGCG- -5' |
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26996 | 5' | -53.9 | NC_005809.1 | + | 21935 | 0.71 | 0.409075 |
Target: 5'- cACCGCCGaccaaggcCCAACggGGcacAGUGCGCGg -3' miRNA: 3'- aUGGCGGC--------GGUUGuaCU---UCAUGCGCg -5' |
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26996 | 5' | -53.9 | NC_005809.1 | + | 27718 | 0.7 | 0.448673 |
Target: 5'- gGCuCGCCGCCggUcauggacuugAUGAGGcccuCGCGCa -3' miRNA: 3'- aUG-GCGGCGGuuG----------UACUUCau--GCGCG- -5' |
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26996 | 5' | -53.9 | NC_005809.1 | + | 17203 | 0.7 | 0.448673 |
Target: 5'- cGCCGCCGCCGAag-GAGcGUugcaggACGCGg -3' miRNA: 3'- aUGGCGGCGGUUguaCUU-CA------UGCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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