miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26996 5' -53.9 NC_005809.1 + 27443 0.86 0.040681
Target:  5'- -uCCGCCGCCAGCAUGggGU-CGgGCc -3'
miRNA:   3'- auGGCGGCGGUUGUACuuCAuGCgCG- -5'
26996 5' -53.9 NC_005809.1 + 21882 0.7 0.448673
Target:  5'- -cUCGUCGuCCAGCccAUaGAGUGCGCGCa -3'
miRNA:   3'- auGGCGGC-GGUUG--UAcUUCAUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 13919 0.7 0.479719
Target:  5'- gGCCGCCGgcaCCGAUcUGGcacUGCGCGCg -3'
miRNA:   3'- aUGGCGGC---GGUUGuACUuc-AUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 37783 0.66 0.725069
Target:  5'- cAgCGCCaGCCGGCGUGc--UGgGCGCa -3'
miRNA:   3'- aUgGCGG-CGGUUGUACuucAUgCGCG- -5'
26996 5' -53.9 NC_005809.1 + 31477 0.74 0.260142
Target:  5'- gGCCGCaGCCGACA--AGGUgcucGCGCGCg -3'
miRNA:   3'- aUGGCGgCGGUUGUacUUCA----UGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 20149 0.73 0.312172
Target:  5'- cGCCGCCGUCAagGCGUGGcuGGcgaacgucACGCGCu -3'
miRNA:   3'- aUGGCGGCGGU--UGUACU--UCa-------UGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 34357 0.72 0.336776
Target:  5'- gGCCGCCGaCCAGCGcGAcuacgAGgcCGUGCg -3'
miRNA:   3'- aUGGCGGC-GGUUGUaCU-----UCauGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 16816 0.72 0.345286
Target:  5'- uUGCCGCCGcCCAGCA------GCGCGCc -3'
miRNA:   3'- -AUGGCGGC-GGUUGUacuucaUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 34396 0.71 0.399521
Target:  5'- aAUCGCCGgCAGCAUccGGgcgcACGCGCa -3'
miRNA:   3'- aUGGCGGCgGUUGUAcuUCa---UGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 8965 0.7 0.448673
Target:  5'- gUGCCGUaauUGCCAGCGUGGccGUGC-CGCg -3'
miRNA:   3'- -AUGGCG---GCGGUUGUACUu-CAUGcGCG- -5'
26996 5' -53.9 NC_005809.1 + 30829 0.71 0.409075
Target:  5'- aACCuGUCGCCGAUcaguucgcacaAUGggGUGCGCa- -3'
miRNA:   3'- aUGG-CGGCGGUUG-----------UACuuCAUGCGcg -5'
26996 5' -53.9 NC_005809.1 + 33244 0.72 0.37173
Target:  5'- aUGCCGCCGCCcgccGCGccGAcGUGCGcCGCc -3'
miRNA:   3'- -AUGGCGGCGGu---UGUa-CUuCAUGC-GCG- -5'
26996 5' -53.9 NC_005809.1 + 15081 0.76 0.198337
Target:  5'- gGCCgagGCCGCCGGCAUccucgcguGGUGCGUGCg -3'
miRNA:   3'- aUGG---CGGCGGUUGUAcu------UCAUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 34903 0.71 0.409075
Target:  5'- gAUCGCCGCCAAa--GAAcgGCGCGUg -3'
miRNA:   3'- aUGGCGGCGGUUguaCUUcaUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 8751 0.75 0.240101
Target:  5'- cGCUaCCGUCAACAUGGAauuUGCGCGCg -3'
miRNA:   3'- aUGGcGGCGGUUGUACUUc--AUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 33346 0.72 0.37173
Target:  5'- aACUGCCGCCGggcgcgccGCA-GAAcGUGCGcCGCg -3'
miRNA:   3'- aUGGCGGCGGU--------UGUaCUU-CAUGC-GCG- -5'
26996 5' -53.9 NC_005809.1 + 33880 0.71 0.428604
Target:  5'- gACCcgGCCaguacaCCAACGccGAGGUGCGCGCg -3'
miRNA:   3'- aUGG--CGGc-----GGUUGUa-CUUCAUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 41429 0.7 0.473424
Target:  5'- gACCGCCGCCGuaGCGcGAgcuaacgguuacaccGGgccgAUGCGCg -3'
miRNA:   3'- aUGGCGGCGGU--UGUaCU---------------UCa---UGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 14530 0.75 0.240101
Target:  5'- gACCGUCGCCGACGUGuucuucgGCGaCGCc -3'
miRNA:   3'- aUGGCGGCGGUUGUACuuca---UGC-GCG- -5'
26996 5' -53.9 NC_005809.1 + 803 0.73 0.320219
Target:  5'- aAUCGCCGUCAGCAggUGGcugggcuugAGcGCGCGCa -3'
miRNA:   3'- aUGGCGGCGGUUGU--ACU---------UCaUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.