miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26996 5' -53.9 NC_005809.1 + 23460 0.67 0.635024
Target:  5'- cGCgCGUacaCGCCGGCGUGGaacaGGUGCGcCGUg -3'
miRNA:   3'- aUG-GCG---GCGGUUGUACU----UCAUGC-GCG- -5'
26996 5' -53.9 NC_005809.1 + 4172 0.67 0.635024
Target:  5'- cGCCGUgGUCGAgGUGuagccAGUGgGCGCc -3'
miRNA:   3'- aUGGCGgCGGUUgUACu----UCAUgCGCG- -5'
26996 5' -53.9 NC_005809.1 + 36472 0.67 0.635024
Target:  5'- cACCGuuG-CGACAUGcgcAAGgcCGCGCu -3'
miRNA:   3'- aUGGCggCgGUUGUAC---UUCauGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 4265 0.67 0.635024
Target:  5'- gGCCGUcagCGCCGGCAUGGugauGgcCGUGUc -3'
miRNA:   3'- aUGGCG---GCGGUUGUACUu---CauGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 27854 0.67 0.635024
Target:  5'- cGCCGCUGCUcaagAACGUGuc---CGCGCu -3'
miRNA:   3'- aUGGCGGCGG----UUGUACuucauGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 5363 0.67 0.635024
Target:  5'- gGCCGCCugcaccgcGCCcaggguUAUGucacuGGUGCGCGCc -3'
miRNA:   3'- aUGGCGG--------CGGuu----GUACu----UCAUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 16615 0.67 0.623635
Target:  5'- uUGgCGCCGCCGuugGUGAAgagguuGUugGUGCa -3'
miRNA:   3'- -AUgGCGGCGGUug-UACUU------CAugCGCG- -5'
26996 5' -53.9 NC_005809.1 + 33922 0.67 0.623635
Target:  5'- aUGCCGaCCGCCGA--UGAAGgcCG-GCg -3'
miRNA:   3'- -AUGGC-GGCGGUUguACUUCauGCgCG- -5'
26996 5' -53.9 NC_005809.1 + 18548 0.67 0.622496
Target:  5'- gGCCGaaGUCGAUcacgucgGUGGAGgcCGCGCu -3'
miRNA:   3'- aUGGCggCGGUUG-------UACUUCauGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 1057 0.67 0.612253
Target:  5'- -gUCGCCGCgAACcgGcguccAGUaACGCGCg -3'
miRNA:   3'- auGGCGGCGgUUGuaCu----UCA-UGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 42262 0.67 0.612253
Target:  5'- gUACgGCaCGCCcugGACG-GAAGaGCGCGCc -3'
miRNA:   3'- -AUGgCG-GCGG---UUGUaCUUCaUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 37050 0.67 0.612253
Target:  5'- aGCUGCCgGCCuggaacuaccaaGGCAccGAGUugGCGCu -3'
miRNA:   3'- aUGGCGG-CGG------------UUGUacUUCAugCGCG- -5'
26996 5' -53.9 NC_005809.1 + 29716 0.68 0.600889
Target:  5'- cUACaacaaGCUGaCCAACAgcccgGAcgAGUugGCGCg -3'
miRNA:   3'- -AUGg----CGGC-GGUUGUa----CU--UCAugCGCG- -5'
26996 5' -53.9 NC_005809.1 + 17782 0.68 0.600889
Target:  5'- -gUCGCgCGCgAACGgauaGAAGcGCGCGCa -3'
miRNA:   3'- auGGCG-GCGgUUGUa---CUUCaUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 19049 0.68 0.600889
Target:  5'- gGCCGCCGgCGGCGUcGAucaGCGUGUc -3'
miRNA:   3'- aUGGCGGCgGUUGUA-CUucaUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 38335 0.68 0.600889
Target:  5'- cACCGacuaCGCCAucuacgucugcgACgAUGGcacGGUGCGCGCc -3'
miRNA:   3'- aUGGCg---GCGGU------------UG-UACU---UCAUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 16843 0.68 0.600889
Target:  5'- gUGCUGCCGCCG--GUGAGG-ACGaCGa -3'
miRNA:   3'- -AUGGCGGCGGUugUACUUCaUGC-GCg -5'
26996 5' -53.9 NC_005809.1 + 13257 0.68 0.589555
Target:  5'- gACCGCCaCCGcCuUGAAGUGCuGgGCa -3'
miRNA:   3'- aUGGCGGcGGUuGuACUUCAUG-CgCG- -5'
26996 5' -53.9 NC_005809.1 + 14444 0.68 0.589555
Target:  5'- cUGCUGCCGcCCGACcaGgcGUAcCGCGUg -3'
miRNA:   3'- -AUGGCGGC-GGUUGuaCuuCAU-GCGCG- -5'
26996 5' -53.9 NC_005809.1 + 5357 0.68 0.589555
Target:  5'- uUGgCGacaGCCAACAUGcucgacAGGUGCGUGCu -3'
miRNA:   3'- -AUgGCgg-CGGUUGUAC------UUCAUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.