miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26996 5' -53.9 NC_005809.1 + 5890 0.66 0.680443
Target:  5'- gGCauagGUCGCCAGCGUGGugaguGUGC-CGCc -3'
miRNA:   3'- aUGg---CGGCGGUUGUACUu----CAUGcGCG- -5'
26996 5' -53.9 NC_005809.1 + 34832 0.66 0.673661
Target:  5'- -uUCGUCGCCAACAgcaagccggccgccGAGcGUGCGCuGCa -3'
miRNA:   3'- auGGCGGCGGUUGUa-------------CUU-CAUGCG-CG- -5'
26996 5' -53.9 NC_005809.1 + 39098 0.66 0.669132
Target:  5'- gGCCGUCGaacuCCAGCGcGAacaucGGgGCGCGCg -3'
miRNA:   3'- aUGGCGGC----GGUUGUaCU-----UCaUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 8395 0.66 0.669132
Target:  5'- aAUCGCCGCCcACGUGucGggcaGCGaGCa -3'
miRNA:   3'- aUGGCGGCGGuUGUACuuCa---UGCgCG- -5'
26996 5' -53.9 NC_005809.1 + 19109 0.66 0.669132
Target:  5'- cACCuGUuccaCGCCGGCGU---GUACGCGCg -3'
miRNA:   3'- aUGG-CG----GCGGUUGUAcuuCAUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 30574 0.66 0.669132
Target:  5'- cGCUGCUgGCCGACGUGGaaaAGgccaagauUGCGCa -3'
miRNA:   3'- aUGGCGG-CGGUUGUACU---UCau------GCGCG- -5'
26996 5' -53.9 NC_005809.1 + 34989 0.66 0.667999
Target:  5'- cACCGUCGCCGACgacuucGUGGAcGUguccaagccggugGCGcCGCa -3'
miRNA:   3'- aUGGCGGCGGUUG------UACUU-CA-------------UGC-GCG- -5'
26996 5' -53.9 NC_005809.1 + 32449 0.67 0.662327
Target:  5'- gACUGCCccuacgcccccuacuGCCGAgGUGggGgcggccgAUGCGCc -3'
miRNA:   3'- aUGGCGG---------------CGGUUgUACuuCa------UGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 13764 0.67 0.657785
Target:  5'- -uCCaG-CGCCGACAUGAGcgcaaucuuGUGCGCGUu -3'
miRNA:   3'- auGG-CgGCGGUUGUACUU---------CAUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 893 0.67 0.657785
Target:  5'- gGCCGCCGCguuguucCA-GAAGUugacCGCGCu -3'
miRNA:   3'- aUGGCGGCGguu----GUaCUUCAu---GCGCG- -5'
26996 5' -53.9 NC_005809.1 + 16504 0.67 0.657785
Target:  5'- -cCCGCCccgaguucGCCGagcGCAUGGA--GCGCGCc -3'
miRNA:   3'- auGGCGG--------CGGU---UGUACUUcaUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 35506 0.67 0.657785
Target:  5'- gGCCGCgGCgu-CAUGAAGUACcuggcCGCc -3'
miRNA:   3'- aUGGCGgCGguuGUACUUCAUGc----GCG- -5'
26996 5' -53.9 NC_005809.1 + 5467 0.67 0.650963
Target:  5'- -cCCGCCgggcggcgagguguuGCCGAUggGggGUACG-GCg -3'
miRNA:   3'- auGGCGG---------------CGGUUGuaCuuCAUGCgCG- -5'
26996 5' -53.9 NC_005809.1 + 3897 0.67 0.646412
Target:  5'- -gUCGCCGCCGAacuUGGuagauuucuucGGggGCGCGCu -3'
miRNA:   3'- auGGCGGCGGUUgu-ACU-----------UCa-UGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 35209 0.67 0.646412
Target:  5'- cGCCGCuggacgaacgaCGCCGAgGUcGAGgcCGCGCu -3'
miRNA:   3'- aUGGCG-----------GCGGUUgUAcUUCauGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 33997 0.67 0.642996
Target:  5'- gGCCGCaCGCgCGGCcuacgacgcccaggAUGAGGUcgaGCGCg -3'
miRNA:   3'- aUGGCG-GCG-GUUG--------------UACUUCAug-CGCG- -5'
26996 5' -53.9 NC_005809.1 + 8630 0.67 0.641858
Target:  5'- gGCCGCUGCgGugGcGAGGUcgccggccuucauCGCGCg -3'
miRNA:   3'- aUGGCGGCGgUugUaCUUCAu------------GCGCG- -5'
26996 5' -53.9 NC_005809.1 + 37149 0.67 0.635024
Target:  5'- --aCGCCGCCAuccgcgcCGUGGAgcGUACGCa- -3'
miRNA:   3'- augGCGGCGGUu------GUACUU--CAUGCGcg -5'
26996 5' -53.9 NC_005809.1 + 4172 0.67 0.635024
Target:  5'- cGCCGUgGUCGAgGUGuagccAGUGgGCGCc -3'
miRNA:   3'- aUGGCGgCGGUUgUACu----UCAUgCGCG- -5'
26996 5' -53.9 NC_005809.1 + 5363 0.67 0.635024
Target:  5'- gGCCGCCugcaccgcGCCcaggguUAUGucacuGGUGCGCGCc -3'
miRNA:   3'- aUGGCGG--------CGGuu----GUACu----UCAUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.