miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26996 5' -53.9 NC_005809.1 + 10543 0.66 0.702903
Target:  5'- -uCCGCCGCCAcgcGCAacGGGUAUugcuggaacaGCGCc -3'
miRNA:   3'- auGGCGGCGGU---UGUacUUCAUG----------CGCG- -5'
26996 5' -53.9 NC_005809.1 + 38544 0.66 0.702903
Target:  5'- cGCCGCgGCCGGCuuUGAAGccuauCGCu- -3'
miRNA:   3'- aUGGCGgCGGUUGu-ACUUCau---GCGcg -5'
26996 5' -53.9 NC_005809.1 + 19635 0.66 0.714029
Target:  5'- gGCCGCgacaucgGCCAGCGUcGGGUugGUGg -3'
miRNA:   3'- aUGGCGg------CGGUUGUAcUUCAugCGCg -5'
26996 5' -53.9 NC_005809.1 + 18046 0.66 0.714029
Target:  5'- gGCUGCUuggggGCCuuaccGGCGcGggGUGCGUGCu -3'
miRNA:   3'- aUGGCGG-----CGG-----UUGUaCuuCAUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 40422 0.66 0.714029
Target:  5'- --aUGCCGCCAGCAaGAccauaaAGUGCcUGCa -3'
miRNA:   3'- augGCGGCGGUUGUaCU------UCAUGcGCG- -5'
26996 5' -53.9 NC_005809.1 + 32383 0.66 0.725069
Target:  5'- gGCCGCCcagcaggaaGCCAGCAccGAaaaaaAGccGCGCGCc -3'
miRNA:   3'- aUGGCGG---------CGGUUGUa-CU-----UCa-UGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 20338 0.66 0.714029
Target:  5'- cAUCGCgGCCGACAaccAGGgcCGCGUc -3'
miRNA:   3'- aUGGCGgCGGUUGUac-UUCauGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 23460 0.67 0.635024
Target:  5'- cGCgCGUacaCGCCGGCGUGGaacaGGUGCGcCGUg -3'
miRNA:   3'- aUG-GCG---GCGGUUGUACU----UCAUGC-GCG- -5'
26996 5' -53.9 NC_005809.1 + 35209 0.67 0.646412
Target:  5'- cGCCGCuggacgaacgaCGCCGAgGUcGAGgcCGCGCu -3'
miRNA:   3'- aUGGCG-----------GCGGUUgUAcUUCauGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 5467 0.67 0.650963
Target:  5'- -cCCGCCgggcggcgagguguuGCCGAUggGggGUACG-GCg -3'
miRNA:   3'- auGGCGG---------------CGGUUGuaCuuCAUGCgCG- -5'
26996 5' -53.9 NC_005809.1 + 4172 0.67 0.635024
Target:  5'- cGCCGUgGUCGAgGUGuagccAGUGgGCGCc -3'
miRNA:   3'- aUGGCGgCGGUUgUACu----UCAUgCGCG- -5'
26996 5' -53.9 NC_005809.1 + 33997 0.67 0.642996
Target:  5'- gGCCGCaCGCgCGGCcuacgacgcccaggAUGAGGUcgaGCGCg -3'
miRNA:   3'- aUGGCG-GCG-GUUG--------------UACUUCAug-CGCG- -5'
26996 5' -53.9 NC_005809.1 + 16504 0.67 0.657785
Target:  5'- -cCCGCCccgaguucGCCGagcGCAUGGA--GCGCGCc -3'
miRNA:   3'- auGGCGG--------CGGU---UGUACUUcaUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 893 0.67 0.657785
Target:  5'- gGCCGCCGCguuguucCA-GAAGUugacCGCGCu -3'
miRNA:   3'- aUGGCGGCGguu----GUaCUUCAu---GCGCG- -5'
26996 5' -53.9 NC_005809.1 + 35506 0.67 0.657785
Target:  5'- gGCCGCgGCgu-CAUGAAGUACcuggcCGCc -3'
miRNA:   3'- aUGGCGgCGguuGUACUUCAUGc----GCG- -5'
26996 5' -53.9 NC_005809.1 + 1057 0.67 0.612253
Target:  5'- -gUCGCCGCgAACcgGcguccAGUaACGCGCg -3'
miRNA:   3'- auGGCGGCGgUUGuaCu----UCA-UGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 42262 0.67 0.612253
Target:  5'- gUACgGCaCGCCcugGACG-GAAGaGCGCGCc -3'
miRNA:   3'- -AUGgCG-GCGG---UUGUaCUUCaUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 37050 0.67 0.612253
Target:  5'- aGCUGCCgGCCuggaacuaccaaGGCAccGAGUugGCGCu -3'
miRNA:   3'- aUGGCGG-CGG------------UUGUacUUCAugCGCG- -5'
26996 5' -53.9 NC_005809.1 + 18548 0.67 0.622496
Target:  5'- gGCCGaaGUCGAUcacgucgGUGGAGgcCGCGCu -3'
miRNA:   3'- aUGGCggCGGUUG-------UACUUCauGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 16615 0.67 0.623635
Target:  5'- uUGgCGCCGCCGuugGUGAAgagguuGUugGUGCa -3'
miRNA:   3'- -AUgGCGGCGGUug-UACUU------CAugCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.