miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26996 5' -53.9 NC_005809.1 + 8751 0.75 0.240101
Target:  5'- cGCUaCCGUCAACAUGGAauuUGCGCGCg -3'
miRNA:   3'- aUGGcGGCGGUUGUACUUc--AUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 8965 0.7 0.448673
Target:  5'- gUGCCGUaauUGCCAGCGUGGccGUGC-CGCg -3'
miRNA:   3'- -AUGGCG---GCGGUUGUACUu-CAUGcGCG- -5'
26996 5' -53.9 NC_005809.1 + 10148 0.68 0.578258
Target:  5'- cGCUGCCGUCGucuugGCA-GAcGUgGCGCGCg -3'
miRNA:   3'- aUGGCGGCGGU-----UGUaCUuCA-UGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 10543 0.66 0.702903
Target:  5'- -uCCGCCGCCAcgcGCAacGGGUAUugcuggaacaGCGCc -3'
miRNA:   3'- auGGCGGCGGU---UGUacUUCAUG----------CGCG- -5'
26996 5' -53.9 NC_005809.1 + 12993 0.68 0.555818
Target:  5'- aACCGcCCGCCGuucuCGUacAGgcCGCGCa -3'
miRNA:   3'- aUGGC-GGCGGUu---GUAcuUCauGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 13060 0.69 0.54469
Target:  5'- gUGCgGCCGUCuGCAUGuuGaaUugGCGCu -3'
miRNA:   3'- -AUGgCGGCGGuUGUACuuC--AugCGCG- -5'
26996 5' -53.9 NC_005809.1 + 13257 0.68 0.589555
Target:  5'- gACCGCCaCCGcCuUGAAGUGCuGgGCa -3'
miRNA:   3'- aUGGCGGcGGUuGuACUUCAUG-CgCG- -5'
26996 5' -53.9 NC_005809.1 + 13346 0.66 0.680443
Target:  5'- -gUCGCCGCC-----GAAGU-CGCGCa -3'
miRNA:   3'- auGGCGGCGGuuguaCUUCAuGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 13764 0.67 0.657785
Target:  5'- -uCCaG-CGCCGACAUGAGcgcaaucuuGUGCGCGUu -3'
miRNA:   3'- auGG-CgGCGGUUGUACUU---------CAUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 13919 0.7 0.479719
Target:  5'- gGCCGCCGgcaCCGAUcUGGcacUGCGCGCg -3'
miRNA:   3'- aUGGCGGC---GGUUGuACUuc-AUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 13997 0.68 0.56701
Target:  5'- --aCGCUGCCggUGgccGAcGUGCGCGCc -3'
miRNA:   3'- augGCGGCGGuuGUa--CUuCAUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 14444 0.68 0.589555
Target:  5'- cUGCUGCCGcCCGACcaGgcGUAcCGCGUg -3'
miRNA:   3'- -AUGGCGGC-GGUUGuaCuuCAU-GCGCG- -5'
26996 5' -53.9 NC_005809.1 + 14530 0.75 0.240101
Target:  5'- gACCGUCGCCGACGUGuucuucgGCGaCGCc -3'
miRNA:   3'- aUGGCGGCGGUUGUACuuca---UGC-GCG- -5'
26996 5' -53.9 NC_005809.1 + 14746 0.71 0.409075
Target:  5'- gGCCGgCGCCAccGCggGcAGcGCGCGCg -3'
miRNA:   3'- aUGGCgGCGGU--UGuaCuUCaUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 14991 0.66 0.702903
Target:  5'- cUGgCGCCGCCugcuGCcgGugcccuuUACGCGCa -3'
miRNA:   3'- -AUgGCGGCGGu---UGuaCuuc----AUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 15081 0.76 0.198337
Target:  5'- gGCCgagGCCGCCGGCAUccucgcguGGUGCGUGCg -3'
miRNA:   3'- aUGG---CGGCGGUUGUAcu------UCAUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 15145 0.66 0.680443
Target:  5'- cUGCgGCCGCCGggcGCGgUGcgccagGCGCGCg -3'
miRNA:   3'- -AUGgCGGCGGU---UGU-ACuuca--UGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 15569 0.66 0.725069
Target:  5'- aUGgCGCCGUCA--GUGAcg-ACGCGCu -3'
miRNA:   3'- -AUgGCGGCGGUugUACUucaUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 15765 0.7 0.458901
Target:  5'- cGuuGCCGCCAAU----GGUGCGaCGCa -3'
miRNA:   3'- aUggCGGCGGUUGuacuUCAUGC-GCG- -5'
26996 5' -53.9 NC_005809.1 + 16504 0.67 0.657785
Target:  5'- -cCCGCCccgaguucGCCGagcGCAUGGA--GCGCGCc -3'
miRNA:   3'- auGGCGG--------CGGU---UGUACUUcaUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.