miRNA display CGI


Results 21 - 40 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26996 5' -53.9 NC_005809.1 + 30829 0.71 0.409075
Target:  5'- aACCuGUCGCCGAUcaguucgcacaAUGggGUGCGCa- -3'
miRNA:   3'- aUGG-CGGCGGUUG-----------UACuuCAUGCGcg -5'
26996 5' -53.9 NC_005809.1 + 34903 0.71 0.409075
Target:  5'- gAUCGCCGCCAAa--GAAcgGCGCGUg -3'
miRNA:   3'- aUGGCGGCGGUUguaCUUcaUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 33880 0.71 0.428604
Target:  5'- gACCcgGCCaguacaCCAACGccGAGGUGCGCGCg -3'
miRNA:   3'- aUGG--CGGc-----GGUUGUa-CUUCAUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 21882 0.7 0.448673
Target:  5'- -cUCGUCGuCCAGCccAUaGAGUGCGCGCa -3'
miRNA:   3'- auGGCGGC-GGUUG--UAcUUCAUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 17203 0.7 0.448673
Target:  5'- cGCCGCCGCCGAag-GAGcGUugcaggACGCGg -3'
miRNA:   3'- aUGGCGGCGGUUguaCUU-CA------UGCGCg -5'
26996 5' -53.9 NC_005809.1 + 27718 0.7 0.448673
Target:  5'- gGCuCGCCGCCggUcauggacuugAUGAGGcccuCGCGCa -3'
miRNA:   3'- aUG-GCGGCGGuuG----------UACUUCau--GCGCG- -5'
26996 5' -53.9 NC_005809.1 + 8965 0.7 0.448673
Target:  5'- gUGCCGUaauUGCCAGCGUGGccGUGC-CGCg -3'
miRNA:   3'- -AUGGCG---GCGGUUGUACUu-CAUGcGCG- -5'
26996 5' -53.9 NC_005809.1 + 15765 0.7 0.458901
Target:  5'- cGuuGCCGCCAAU----GGUGCGaCGCa -3'
miRNA:   3'- aUggCGGCGGUUGuacuUCAUGC-GCG- -5'
26996 5' -53.9 NC_005809.1 + 41429 0.7 0.473424
Target:  5'- gACCGCCGCCGuaGCGcGAgcuaacgguuacaccGGgccgAUGCGCg -3'
miRNA:   3'- aUGGCGGCGGU--UGUaCU---------------UCa---UGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 13919 0.7 0.479719
Target:  5'- gGCCGCCGgcaCCGAUcUGGcacUGCGCGCg -3'
miRNA:   3'- aUGGCGGC---GGUUGuACUuc-AUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 8293 0.69 0.500989
Target:  5'- cGCUGCCggggcagugcaGCCAGC----GGUGCGCGCu -3'
miRNA:   3'- aUGGCGG-----------CGGUUGuacuUCAUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 18821 0.69 0.500989
Target:  5'- gGCCcgguGgCGCCGGCAUGgcGcugcUGCGCGCc -3'
miRNA:   3'- aUGG----CgGCGGUUGUACuuC----AUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 28298 0.69 0.505293
Target:  5'- cAUCGCCGaCAGCAUGGugcagcaggccaaccAGuUGCGCGUg -3'
miRNA:   3'- aUGGCGGCgGUUGUACU---------------UC-AUGCGCG- -5'
26996 5' -53.9 NC_005809.1 + 41541 0.69 0.510695
Target:  5'- aUGCUGCCGCCGGcCGUGGccuuccaGGUguucgACGCuGCg -3'
miRNA:   3'- -AUGGCGGCGGUU-GUACU-------UCA-----UGCG-CG- -5'
26996 5' -53.9 NC_005809.1 + 1590 0.69 0.511779
Target:  5'- gGCCGCCGCCuuCcugGUGGucgAGUGCGUugguuuGCg -3'
miRNA:   3'- aUGGCGGCGGuuG---UACU---UCAUGCG------CG- -5'
26996 5' -53.9 NC_005809.1 + 23561 0.69 0.511779
Target:  5'- gGCCGacauCGCCGGCA---GGUGCGgGCg -3'
miRNA:   3'- aUGGCg---GCGGUUGUacuUCAUGCgCG- -5'
26996 5' -53.9 NC_005809.1 + 19464 0.69 0.521571
Target:  5'- uUACCGCUGUCGcCGUGGGcgccgccGUugGCGUc -3'
miRNA:   3'- -AUGGCGGCGGUuGUACUU-------CAugCGCG- -5'
26996 5' -53.9 NC_005809.1 + 23357 0.69 0.543581
Target:  5'- -cUCGCCGCCGAUgaacacgGUGgcGUGCcCGCu -3'
miRNA:   3'- auGGCGGCGGUUG-------UACuuCAUGcGCG- -5'
26996 5' -53.9 NC_005809.1 + 17444 0.69 0.54469
Target:  5'- gGCC-CCGCCAGCAUcGAGGccAgGUGCc -3'
miRNA:   3'- aUGGcGGCGGUUGUA-CUUCa-UgCGCG- -5'
26996 5' -53.9 NC_005809.1 + 36031 0.69 0.54469
Target:  5'- gGCUGCuacgucaaCGCCAGCAUcGAAcuGUGgGCGCa -3'
miRNA:   3'- aUGGCG--------GCGGUUGUA-CUU--CAUgCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.