miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26997 3' -53.6 NC_005809.1 + 41918 1.09 0.00093
Target:  5'- cAGAAACACCAAAAGCCCCCGCCUGACc -3'
miRNA:   3'- -UCUUUGUGGUUUUCGGGGGCGGACUG- -5'
26997 3' -53.6 NC_005809.1 + 41308 0.68 0.567695
Target:  5'- cGGGAAUACC---GGCgCUCGCCgGACg -3'
miRNA:   3'- -UCUUUGUGGuuuUCGgGGGCGGaCUG- -5'
26997 3' -53.6 NC_005809.1 + 39160 0.72 0.370905
Target:  5'- uAGcgGgGCCGAAAGgCCCCGCCaaGGCa -3'
miRNA:   3'- -UCuuUgUGGUUUUCgGGGGCGGa-CUG- -5'
26997 3' -53.6 NC_005809.1 + 38116 0.71 0.398883
Target:  5'- aAGGAACuggaAGAAGCCgCaCGCCUGGCg -3'
miRNA:   3'- -UCUUUGugg-UUUUCGGgG-GCGGACUG- -5'
26997 3' -53.6 NC_005809.1 + 37980 0.69 0.534044
Target:  5'- --cGAgGCCGAGcAGUUCCuCGCCUGGCg -3'
miRNA:   3'- ucuUUgUGGUUU-UCGGGG-GCGGACUG- -5'
26997 3' -53.6 NC_005809.1 + 37024 0.68 0.553036
Target:  5'- cGAAGCcaugcgcgugauugACCAGAAGCUgCCGgCCUGGa -3'
miRNA:   3'- uCUUUG--------------UGGUUUUCGGgGGC-GGACUg -5'
26997 3' -53.6 NC_005809.1 + 36179 0.7 0.479686
Target:  5'- cGAcuACACCGGGccggccGGCCUgCGCCUGAUu -3'
miRNA:   3'- uCUu-UGUGGUUU------UCGGGgGCGGACUG- -5'
26997 3' -53.6 NC_005809.1 + 35763 0.67 0.647745
Target:  5'- cGAAacccGCGCCGu--GUCCCUGgCUGACc -3'
miRNA:   3'- uCUU----UGUGGUuuuCGGGGGCgGACUG- -5'
26997 3' -53.6 NC_005809.1 + 35189 0.66 0.726971
Target:  5'- uGGAAGguCGCCGc-GGUgCCCGCCgcugGACg -3'
miRNA:   3'- -UCUUU--GUGGUuuUCGgGGGCGGa---CUG- -5'
26997 3' -53.6 NC_005809.1 + 35063 0.66 0.726971
Target:  5'- -cGGACGCCGAAAGCgCgCGCCg--- -3'
miRNA:   3'- ucUUUGUGGUUUUCGgGgGCGGacug -5'
26997 3' -53.6 NC_005809.1 + 34588 0.7 0.448397
Target:  5'- --cGACGCCGugguGCUgCUGCCUGACg -3'
miRNA:   3'- ucuUUGUGGUuuu-CGGgGGCGGACUG- -5'
26997 3' -53.6 NC_005809.1 + 31684 0.68 0.601855
Target:  5'- -cAAGCACCAGuaacuGCUgcagcaCCGCCUGACc -3'
miRNA:   3'- ucUUUGUGGUUuu---CGGg-----GGCGGACUG- -5'
26997 3' -53.6 NC_005809.1 + 31377 0.66 0.682036
Target:  5'- cGGAAGCugCucAAGGCguugaaCCCCGaCUGGCa -3'
miRNA:   3'- -UCUUUGugGu-UUUCG------GGGGCgGACUG- -5'
26997 3' -53.6 NC_005809.1 + 31180 0.66 0.715859
Target:  5'- uGAAGCAC---GGGCCgcgcacguUCUGCCUGACg -3'
miRNA:   3'- uCUUUGUGguuUUCGG--------GGGCGGACUG- -5'
26997 3' -53.6 NC_005809.1 + 30121 0.67 0.647745
Target:  5'- uGAGgccGCGCCAGAAcacGCCgCCgGCCUGcACc -3'
miRNA:   3'- uCUU---UGUGGUUUU---CGG-GGgCGGAC-UG- -5'
26997 3' -53.6 NC_005809.1 + 29245 0.66 0.670641
Target:  5'- cGGcGACcuGCCGAAAGCCUacgCCGCCU-ACa -3'
miRNA:   3'- -UCuUUG--UGGUUUUCGGG---GGCGGAcUG- -5'
26997 3' -53.6 NC_005809.1 + 28356 0.68 0.556409
Target:  5'- ---cGCGCCAagGAAGCCgCgcugCGCCUGACc -3'
miRNA:   3'- ucuuUGUGGU--UUUCGGgG----GCGGACUG- -5'
26997 3' -53.6 NC_005809.1 + 28203 0.7 0.458703
Target:  5'- cGcgGCGCgGAu-GCCCCCGCCUuccagGACa -3'
miRNA:   3'- uCuuUGUGgUUuuCGGGGGCGGA-----CUG- -5'
26997 3' -53.6 NC_005809.1 + 25377 0.66 0.726971
Target:  5'- gGGcAGGCGCCAGAAGCCCUuuUGCgaGu- -3'
miRNA:   3'- -UC-UUUGUGGUUUUCGGGG--GCGgaCug -5'
26997 3' -53.6 NC_005809.1 + 24526 0.66 0.693379
Target:  5'- ---cGCGCCGguAAGGCCCCCaagcagcccGCC-GACa -3'
miRNA:   3'- ucuuUGUGGU--UUUCGGGGG---------CGGaCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.