Results 1 - 20 of 40 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26997 | 3' | -53.6 | NC_005809.1 | + | 1741 | 0.76 | 0.208043 |
Target: 5'- uAGAugAACACCGGGcggucauggccGGCCUgCGCCUGGCg -3' miRNA: 3'- -UCU--UUGUGGUUU-----------UCGGGgGCGGACUG- -5' |
|||||||
26997 | 3' | -53.6 | NC_005809.1 | + | 3788 | 0.66 | 0.682036 |
Target: 5'- -----uGCCGAAAGCCagCGCCUGGa -3' miRNA: 3'- ucuuugUGGUUUUCGGggGCGGACUg -5' |
|||||||
26997 | 3' | -53.6 | NC_005809.1 | + | 7163 | 0.68 | 0.567695 |
Target: 5'- uGAAGC-CCA--GGCCCgaCGCgCUGACg -3' miRNA: 3'- uCUUUGuGGUuuUCGGGg-GCG-GACUG- -5' |
|||||||
26997 | 3' | -53.6 | NC_005809.1 | + | 10015 | 0.7 | 0.479686 |
Target: 5'- ---cGCGCCc--GGCCCCCGcCCUGGu -3' miRNA: 3'- ucuuUGUGGuuuUCGGGGGC-GGACUg -5' |
|||||||
26997 | 3' | -53.6 | NC_005809.1 | + | 10099 | 0.68 | 0.579037 |
Target: 5'- cGGgcGCAUCGGccGCCCCCaCCUcGGCa -3' miRNA: 3'- -UCuuUGUGGUUuuCGGGGGcGGA-CUG- -5' |
|||||||
26997 | 3' | -53.6 | NC_005809.1 | + | 10665 | 0.69 | 0.512005 |
Target: 5'- cGAAACGCCGcAGGCaCUCgGCCUcGAUg -3' miRNA: 3'- uCUUUGUGGUuUUCG-GGGgCGGA-CUG- -5' |
|||||||
26997 | 3' | -53.6 | NC_005809.1 | + | 11576 | 0.67 | 0.613312 |
Target: 5'- cGAAGCcauGCCGcccAGGGCCgCCGgCUGGCc -3' miRNA: 3'- uCUUUG---UGGU---UUUCGGgGGCgGACUG- -5' |
|||||||
26997 | 3' | -53.6 | NC_005809.1 | + | 13535 | 0.66 | 0.726971 |
Target: 5'- ---cGCGCCGAAcuGUCggCCGCCUGACu -3' miRNA: 3'- ucuuUGUGGUUUu-CGGg-GGCGGACUG- -5' |
|||||||
26997 | 3' | -53.6 | NC_005809.1 | + | 15133 | 0.66 | 0.704658 |
Target: 5'- --cAGCGCC-AGGGCCUgcggCCGCCgGGCg -3' miRNA: 3'- ucuUUGUGGuUUUCGGG----GGCGGaCUG- -5' |
|||||||
26997 | 3' | -53.6 | NC_005809.1 | + | 16657 | 0.67 | 0.636268 |
Target: 5'- uGGGcCACCGcAAGCUgcaagucgaaaCCCGCCUGAa -3' miRNA: 3'- uCUUuGUGGUuUUCGG-----------GGGCGGACUg -5' |
|||||||
26997 | 3' | -53.6 | NC_005809.1 | + | 17937 | 0.67 | 0.613312 |
Target: 5'- cGGggGCAC--GAAGCCCCCGUa---- -3' miRNA: 3'- -UCuuUGUGguUUUCGGGGGCGgacug -5' |
|||||||
26997 | 3' | -53.6 | NC_005809.1 | + | 17989 | 0.67 | 0.613312 |
Target: 5'- cGuuACACCA--AGUCgCCGCCgGACu -3' miRNA: 3'- uCuuUGUGGUuuUCGGgGGCGGaCUG- -5' |
|||||||
26997 | 3' | -53.6 | NC_005809.1 | + | 18858 | 0.67 | 0.636268 |
Target: 5'- cGAGGCACU---GGCCCgCGaCCUGGg -3' miRNA: 3'- uCUUUGUGGuuuUCGGGgGC-GGACUg -5' |
|||||||
26997 | 3' | -53.6 | NC_005809.1 | + | 19619 | 0.67 | 0.636268 |
Target: 5'- cAGGAAUACCAGAAGCagaCCgaaGCCUa-- -3' miRNA: 3'- -UCUUUGUGGUUUUCGg--GGg--CGGAcug -5' |
|||||||
26997 | 3' | -53.6 | NC_005809.1 | + | 19710 | 0.66 | 0.726971 |
Target: 5'- uGGAAGCugCAuaGAGGCgccgcgcaucgCCCUGCUUGGg -3' miRNA: 3'- -UCUUUGugGU--UUUCG-----------GGGGCGGACUg -5' |
|||||||
26997 | 3' | -53.6 | NC_005809.1 | + | 20082 | 0.71 | 0.428177 |
Target: 5'- cGGGcAugACCAGcccAGCCCgccccugguuCCGCCUGACa -3' miRNA: 3'- -UCU-UugUGGUUu--UCGGG----------GGCGGACUG- -5' |
|||||||
26997 | 3' | -53.6 | NC_005809.1 | + | 20536 | 0.69 | 0.52298 |
Target: 5'- cAGaAAGCGCCAcacgaugcGgcGCCCCCGCUUGcuGCu -3' miRNA: 3'- -UC-UUUGUGGU--------UuuCGGGGGCGGAC--UG- -5' |
|||||||
26997 | 3' | -53.6 | NC_005809.1 | + | 21959 | 0.68 | 0.601855 |
Target: 5'- --cGACACCGAccuGCgaCgCCGCCUGGCg -3' miRNA: 3'- ucuUUGUGGUUuu-CGg-G-GGCGGACUG- -5' |
|||||||
26997 | 3' | -53.6 | NC_005809.1 | + | 23183 | 0.67 | 0.636268 |
Target: 5'- uGGAAaccuACGCCGAAguggacaaGGCCCUgGCC-GACc -3' miRNA: 3'- -UCUU----UGUGGUUU--------UCGGGGgCGGaCUG- -5' |
|||||||
26997 | 3' | -53.6 | NC_005809.1 | + | 24149 | 0.66 | 0.704658 |
Target: 5'- ---cGCGCCu--GGCCCagCGCCUcGACg -3' miRNA: 3'- ucuuUGUGGuuuUCGGGg-GCGGA-CUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home