Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26997 | 3' | -53.6 | NC_005809.1 | + | 24526 | 0.66 | 0.693379 |
Target: 5'- ---cGCGCCGguAAGGCCCCCaagcagcccGCC-GACa -3' miRNA: 3'- ucuuUGUGGU--UUUCGGGGG---------CGGaCUG- -5' |
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26997 | 3' | -53.6 | NC_005809.1 | + | 25377 | 0.66 | 0.726971 |
Target: 5'- gGGcAGGCGCCAGAAGCCCUuuUGCgaGu- -3' miRNA: 3'- -UC-UUUGUGGUUUUCGGGG--GCGgaCug -5' |
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26997 | 3' | -53.6 | NC_005809.1 | + | 28203 | 0.7 | 0.458703 |
Target: 5'- cGcgGCGCgGAu-GCCCCCGCCUuccagGACa -3' miRNA: 3'- uCuuUGUGgUUuuCGGGGGCGGA-----CUG- -5' |
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26997 | 3' | -53.6 | NC_005809.1 | + | 28356 | 0.68 | 0.556409 |
Target: 5'- ---cGCGCCAagGAAGCCgCgcugCGCCUGACc -3' miRNA: 3'- ucuuUGUGGU--UUUCGGgG----GCGGACUG- -5' |
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26997 | 3' | -53.6 | NC_005809.1 | + | 29245 | 0.66 | 0.670641 |
Target: 5'- cGGcGACcuGCCGAAAGCCUacgCCGCCU-ACa -3' miRNA: 3'- -UCuUUG--UGGUUUUCGGG---GGCGGAcUG- -5' |
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26997 | 3' | -53.6 | NC_005809.1 | + | 30121 | 0.67 | 0.647745 |
Target: 5'- uGAGgccGCGCCAGAAcacGCCgCCgGCCUGcACc -3' miRNA: 3'- uCUU---UGUGGUUUU---CGG-GGgCGGAC-UG- -5' |
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26997 | 3' | -53.6 | NC_005809.1 | + | 31180 | 0.66 | 0.715859 |
Target: 5'- uGAAGCAC---GGGCCgcgcacguUCUGCCUGACg -3' miRNA: 3'- uCUUUGUGguuUUCGG--------GGGCGGACUG- -5' |
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26997 | 3' | -53.6 | NC_005809.1 | + | 31377 | 0.66 | 0.682036 |
Target: 5'- cGGAAGCugCucAAGGCguugaaCCCCGaCUGGCa -3' miRNA: 3'- -UCUUUGugGu-UUUCG------GGGGCgGACUG- -5' |
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26997 | 3' | -53.6 | NC_005809.1 | + | 31684 | 0.68 | 0.601855 |
Target: 5'- -cAAGCACCAGuaacuGCUgcagcaCCGCCUGACc -3' miRNA: 3'- ucUUUGUGGUUuu---CGGg-----GGCGGACUG- -5' |
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26997 | 3' | -53.6 | NC_005809.1 | + | 34588 | 0.7 | 0.448397 |
Target: 5'- --cGACGCCGugguGCUgCUGCCUGACg -3' miRNA: 3'- ucuUUGUGGUuuu-CGGgGGCGGACUG- -5' |
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26997 | 3' | -53.6 | NC_005809.1 | + | 35063 | 0.66 | 0.726971 |
Target: 5'- -cGGACGCCGAAAGCgCgCGCCg--- -3' miRNA: 3'- ucUUUGUGGUUUUCGgGgGCGGacug -5' |
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26997 | 3' | -53.6 | NC_005809.1 | + | 35189 | 0.66 | 0.726971 |
Target: 5'- uGGAAGguCGCCGc-GGUgCCCGCCgcugGACg -3' miRNA: 3'- -UCUUU--GUGGUuuUCGgGGGCGGa---CUG- -5' |
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26997 | 3' | -53.6 | NC_005809.1 | + | 35763 | 0.67 | 0.647745 |
Target: 5'- cGAAacccGCGCCGu--GUCCCUGgCUGACc -3' miRNA: 3'- uCUU----UGUGGUuuuCGGGGGCgGACUG- -5' |
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26997 | 3' | -53.6 | NC_005809.1 | + | 36179 | 0.7 | 0.479686 |
Target: 5'- cGAcuACACCGGGccggccGGCCUgCGCCUGAUu -3' miRNA: 3'- uCUu-UGUGGUUU------UCGGGgGCGGACUG- -5' |
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26997 | 3' | -53.6 | NC_005809.1 | + | 37024 | 0.68 | 0.553036 |
Target: 5'- cGAAGCcaugcgcgugauugACCAGAAGCUgCCGgCCUGGa -3' miRNA: 3'- uCUUUG--------------UGGUUUUCGGgGGC-GGACUg -5' |
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26997 | 3' | -53.6 | NC_005809.1 | + | 37980 | 0.69 | 0.534044 |
Target: 5'- --cGAgGCCGAGcAGUUCCuCGCCUGGCg -3' miRNA: 3'- ucuUUgUGGUUU-UCGGGG-GCGGACUG- -5' |
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26997 | 3' | -53.6 | NC_005809.1 | + | 38116 | 0.71 | 0.398883 |
Target: 5'- aAGGAACuggaAGAAGCCgCaCGCCUGGCg -3' miRNA: 3'- -UCUUUGugg-UUUUCGGgG-GCGGACUG- -5' |
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26997 | 3' | -53.6 | NC_005809.1 | + | 39160 | 0.72 | 0.370905 |
Target: 5'- uAGcgGgGCCGAAAGgCCCCGCCaaGGCa -3' miRNA: 3'- -UCuuUgUGGUUUUCgGGGGCGGa-CUG- -5' |
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26997 | 3' | -53.6 | NC_005809.1 | + | 41308 | 0.68 | 0.567695 |
Target: 5'- cGGGAAUACC---GGCgCUCGCCgGACg -3' miRNA: 3'- -UCUUUGUGGuuuUCGgGGGCGGaCUG- -5' |
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26997 | 3' | -53.6 | NC_005809.1 | + | 41918 | 1.09 | 0.00093 |
Target: 5'- cAGAAACACCAAAAGCCCCCGCCUGACc -3' miRNA: 3'- -UCUUUGUGGUUUUCGGGGGCGGACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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