miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26997 5' -58.6 NC_005809.1 + 12448 0.68 0.360067
Target:  5'- -gGCCGGcGGCgUGuucuggcgcGGCC-UCAUCGCCu -3'
miRNA:   3'- cgCGGCU-CCG-ACu--------CCGGuAGUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 27636 0.68 0.354991
Target:  5'- uCGCCGAguugggcgcgcagucGGCacuUGAGGCCGgccagCAgcagaUCGCCg -3'
miRNA:   3'- cGCGGCU---------------CCG---ACUCCGGUa----GU-----AGCGG- -5'
26997 5' -58.6 NC_005809.1 + 14860 0.68 0.351636
Target:  5'- aGCGCCGcacGCUGGGcGCCuuuaaGUUGCCc -3'
miRNA:   3'- -CGCGGCuc-CGACUC-CGGuag--UAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 18268 0.68 0.335199
Target:  5'- uGCGCCGAGaacUUGccGGCCGUCAgcggGCCg -3'
miRNA:   3'- -CGCGGCUCc--GACu-CCGGUAGUag--CGG- -5'
26997 5' -58.6 NC_005809.1 + 21104 0.69 0.327193
Target:  5'- aGCGCau-GGUcGAGGCCAaCAUCcuGCCg -3'
miRNA:   3'- -CGCGgcuCCGaCUCCGGUaGUAG--CGG- -5'
26997 5' -58.6 NC_005809.1 + 11843 0.69 0.324819
Target:  5'- cGCGCCGcGGUUGGccugggcgaaccccGcGCCAaUAUCGCCc -3'
miRNA:   3'- -CGCGGCuCCGACU--------------C-CGGUaGUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 26316 0.69 0.31933
Target:  5'- cGCGCgCGAGGCcaacGCCAUC--CGCCa -3'
miRNA:   3'- -CGCG-GCUCCGacucCGGUAGuaGCGG- -5'
26997 5' -58.6 NC_005809.1 + 33722 0.69 0.31933
Target:  5'- gGCGaCCGAGGCcaacgcgcuGGCCcgCGUUGCg -3'
miRNA:   3'- -CGC-GGCUCCGacu------CCGGuaGUAGCGg -5'
26997 5' -58.6 NC_005809.1 + 15871 0.69 0.310845
Target:  5'- cGCGCCGAucuguugcucgGGCacguaggUGAGGCCcagCAgcUUGCCg -3'
miRNA:   3'- -CGCGGCU-----------CCG-------ACUCCGGua-GU--AGCGG- -5'
26997 5' -58.6 NC_005809.1 + 23948 0.69 0.304032
Target:  5'- gGCGCCGcccGGC-GAGGUCggCAuUUGCCg -3'
miRNA:   3'- -CGCGGCu--CCGaCUCCGGuaGU-AGCGG- -5'
26997 5' -58.6 NC_005809.1 + 4197 0.69 0.304032
Target:  5'- gGCGCCGAaaaguuggaaucGGCgcgcaccGuGCCAUCGUCGCa -3'
miRNA:   3'- -CGCGGCU------------CCGacu----C-CGGUAGUAGCGg -5'
26997 5' -58.6 NC_005809.1 + 10065 0.69 0.304032
Target:  5'- aGCGuCCGAGGCgucgucGGGGCgAgCcgUGCCa -3'
miRNA:   3'- -CGC-GGCUCCGa-----CUCCGgUaGuaGCGG- -5'
26997 5' -58.6 NC_005809.1 + 23545 0.69 0.304032
Target:  5'- cGCgGUCGAuGGCcucGGCCGaCAUCGCCg -3'
miRNA:   3'- -CG-CGGCU-CCGacuCCGGUaGUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 38871 0.69 0.304032
Target:  5'- uGCGCCGca--UGGGGCagcgCGUCGCCg -3'
miRNA:   3'- -CGCGGCuccgACUCCGgua-GUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 35306 0.69 0.304032
Target:  5'- cCGCCGAGaaGCUGcacaAGGCCGgcgaCAUCgGCCc -3'
miRNA:   3'- cGCGGCUC--CGAC----UCCGGUa---GUAG-CGG- -5'
26997 5' -58.6 NC_005809.1 + 14230 0.69 0.303282
Target:  5'- cGCGCugcccgaCGAGGCcaAGGCCAUCGaguccgaCGCCg -3'
miRNA:   3'- -CGCG-------GCUCCGacUCCGGUAGUa------GCGG- -5'
26997 5' -58.6 NC_005809.1 + 13502 0.69 0.296596
Target:  5'- cGCGCCuuuGGGC-GAGguaagcgguuuGCCGUCcgCGCCg -3'
miRNA:   3'- -CGCGGc--UCCGaCUC-----------CGGUAGuaGCGG- -5'
26997 5' -58.6 NC_005809.1 + 13197 0.7 0.281444
Target:  5'- cGCGCCGAguccgagGGCUGgggcaAGGCCAcCggCGCg -3'
miRNA:   3'- -CGCGGCU-------CCGAC-----UCCGGUaGuaGCGg -5'
26997 5' -58.6 NC_005809.1 + 4528 0.7 0.280033
Target:  5'- aGCGCaucgcaGAccacgaaggucuugGGCuUGAGGCCGaaGUCGCCg -3'
miRNA:   3'- -CGCGg-----CU--------------CCG-ACUCCGGUagUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 36241 0.7 0.268269
Target:  5'- gGCGCUuuGGCUGGGGCgGaacgCGCCg -3'
miRNA:   3'- -CGCGGcuCCGACUCCGgUaguaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.