Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26997 | 5' | -58.6 | NC_005809.1 | + | 13904 | 0.66 | 0.48172 |
Target: 5'- gGCGUCGGGGUUGuuccaguucaGGGCgAU-GUCGCg -3' miRNA: 3'- -CGCGGCUCCGAC----------UCCGgUAgUAGCGg -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 14018 | 0.66 | 0.491907 |
Target: 5'- cGCGCCGcgauGGCcGGcGGCCgcaagGUCGU-GCCg -3' miRNA: 3'- -CGCGGCu---CCGaCU-CCGG-----UAGUAgCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 14230 | 0.69 | 0.303282 |
Target: 5'- cGCGCugcccgaCGAGGCcaAGGCCAUCGaguccgaCGCCg -3' miRNA: 3'- -CGCG-------GCUCCGacUCCGGUAGUa------GCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 14860 | 0.68 | 0.351636 |
Target: 5'- aGCGCCGcacGCUGGGcGCCuuuaaGUUGCCc -3' miRNA: 3'- -CGCGGCuc-CGACUC-CGGuag--UAGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 15064 | 0.76 | 0.095901 |
Target: 5'- cGCGCCGAGaaGCUGGcGGCCGagGcCGCCg -3' miRNA: 3'- -CGCGGCUC--CGACU-CCGGUagUaGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 15134 | 0.67 | 0.41354 |
Target: 5'- aGCGCCaGGGcCUGcGGCCGccgggcgCGgugCGCCa -3' miRNA: 3'- -CGCGGcUCC-GACuCCGGUa------GUa--GCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 15468 | 0.68 | 0.377346 |
Target: 5'- -gGCCGAaGCUGccGuCCAguugCAUCGCCa -3' miRNA: 3'- cgCGGCUcCGACucC-GGUa---GUAGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 15871 | 0.69 | 0.310845 |
Target: 5'- cGCGCCGAucuguugcucgGGCacguaggUGAGGCCcagCAgcUUGCCg -3' miRNA: 3'- -CGCGGCU-----------CCG-------ACUCCGGua-GU--AGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 16274 | 0.67 | 0.432422 |
Target: 5'- cGCGCgCGgccacccggaAGGCUacccGGUCGUCGUCGCg -3' miRNA: 3'- -CGCG-GC----------UCCGAcu--CCGGUAGUAGCGg -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 16791 | 0.75 | 0.113544 |
Target: 5'- cGCGCCGcGcGCaucGcGGCCAUCGUUGCCg -3' miRNA: 3'- -CGCGGCuC-CGa--CuCCGGUAGUAGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 17994 | 0.66 | 0.46166 |
Target: 5'- aCGCCGGacGGCccGAccguGGCCGgccucgcCAUCGCCg -3' miRNA: 3'- cGCGGCU--CCGa-CU----CCGGUa------GUAGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 18268 | 0.68 | 0.335199 |
Target: 5'- uGCGCCGAGaacUUGccGGCCGUCAgcggGCCg -3' miRNA: 3'- -CGCGGCUCc--GACu-CCGGUAGUag--CGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 18396 | 0.67 | 0.395176 |
Target: 5'- gGCGCCGGuGGC---GGCCA-CGUCGgCg -3' miRNA: 3'- -CGCGGCU-CCGacuCCGGUaGUAGCgG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 18424 | 0.68 | 0.377346 |
Target: 5'- cCGUCGAGGCgcuGGGCCAggcgCGCa -3' miRNA: 3'- cGCGGCUCCGac-UCCGGUaguaGCGg -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 18468 | 0.67 | 0.41354 |
Target: 5'- gGCGCCGGcGGCgucGGCCGauUCGUCcaCCg -3' miRNA: 3'- -CGCGGCU-CCGacuCCGGU--AGUAGc-GG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 18973 | 0.72 | 0.186102 |
Target: 5'- --aCCgGGGGCUGcacgcaugacGGCCAUCGUCGCCc -3' miRNA: 3'- cgcGG-CUCCGACu---------CCGGUAGUAGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 19019 | 0.72 | 0.190639 |
Target: 5'- cUGCCGGcgaugucGGCcGAGGCCAUCGaccgcgugCGCCg -3' miRNA: 3'- cGCGGCU-------CCGaCUCCGGUAGUa-------GCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 19357 | 0.72 | 0.207014 |
Target: 5'- -gGCCGAGGCcGAGGCCGaauUCAccgacgagGCCg -3' miRNA: 3'- cgCGGCUCCGaCUCCGGU---AGUag------CGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 19725 | 0.75 | 0.128365 |
Target: 5'- gGCGCCGcgcaucgcccugcuuGGGCUGGuuGCCGUUGUUGCCg -3' miRNA: 3'- -CGCGGC---------------UCCGACUc-CGGUAGUAGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 20175 | 0.66 | 0.491907 |
Target: 5'- uGCGCCuugcGGCUuc-GCCuuGUCGUCGCCc -3' miRNA: 3'- -CGCGGcu--CCGAcucCGG--UAGUAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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