miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26997 5' -58.6 NC_005809.1 + 507 0.66 0.471636
Target:  5'- uGCGCCGcggcggcuugcAGGCgguucUGuucGGCCGUCAcCGCg -3'
miRNA:   3'- -CGCGGC-----------UCCG-----ACu--CCGGUAGUaGCGg -5'
26997 5' -58.6 NC_005809.1 + 1992 0.66 0.442049
Target:  5'- cUGCCGuGGCugaucuUGAGGCCcaggCGcUCGCUg -3'
miRNA:   3'- cGCGGCuCCG------ACUCCGGua--GU-AGCGG- -5'
26997 5' -58.6 NC_005809.1 + 2444 0.67 0.41354
Target:  5'- gGCGCCGAaaCUGcGGCCcaggCGcUCGCCu -3'
miRNA:   3'- -CGCGGCUccGACuCCGGua--GU-AGCGG- -5'
26997 5' -58.6 NC_005809.1 + 3870 0.8 0.052537
Target:  5'- gGCGCCGucGCUGuAGGCCGcgcugcCGUCGCCg -3'
miRNA:   3'- -CGCGGCucCGAC-UCCGGUa-----GUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 4197 0.69 0.304032
Target:  5'- gGCGCCGAaaaguuggaaucGGCgcgcaccGuGCCAUCGUCGCa -3'
miRNA:   3'- -CGCGGCU------------CCGacu----C-CGGUAGUAGCGg -5'
26997 5' -58.6 NC_005809.1 + 4528 0.7 0.280033
Target:  5'- aGCGCaucgcaGAccacgaaggucuugGGCuUGAGGCCGaaGUCGCCg -3'
miRNA:   3'- -CGCGg-----CU--------------CCG-ACUCCGGUagUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 4823 0.67 0.432422
Target:  5'- -gGUCGGGGCcGGcGCCGUCGUCGa- -3'
miRNA:   3'- cgCGGCUCCGaCUcCGGUAGUAGCgg -5'
26997 5' -58.6 NC_005809.1 + 6277 0.66 0.451796
Target:  5'- cGCGCUG-GGC--AGGCCGaacagGUCGCCc -3'
miRNA:   3'- -CGCGGCuCCGacUCCGGUag---UAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 6524 0.66 0.46166
Target:  5'- uUGgCGAGuuUuucGGGGUCGUCGUCGCCc -3'
miRNA:   3'- cGCgGCUCcgA---CUCCGGUAGUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 8639 0.67 0.41354
Target:  5'- gGUGgCGAGGUcgccGGCCuUCAUCGCg -3'
miRNA:   3'- -CGCgGCUCCGacu-CCGGuAGUAGCGg -5'
26997 5' -58.6 NC_005809.1 + 10065 0.69 0.304032
Target:  5'- aGCGuCCGAGGCgucgucGGGGCgAgCcgUGCCa -3'
miRNA:   3'- -CGC-GGCUCCGa-----CUCCGgUaGuaGCGG- -5'
26997 5' -58.6 NC_005809.1 + 11843 0.69 0.324819
Target:  5'- cGCGCCGcGGUUGGccugggcgaaccccGcGCCAaUAUCGCCc -3'
miRNA:   3'- -CGCGGCuCCGACU--------------C-CGGUaGUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 12448 0.68 0.360067
Target:  5'- -gGCCGGcGGCgUGuucuggcgcGGCC-UCAUCGCCu -3'
miRNA:   3'- cgCGGCU-CCG-ACu--------CCGGuAGUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 12593 0.73 0.181173
Target:  5'- cCGuUCGAcGGCUGcauccAGGCCGUCGUgCGCCg -3'
miRNA:   3'- cGC-GGCU-CCGAC-----UCCGGUAGUA-GCGG- -5'
26997 5' -58.6 NC_005809.1 + 12687 0.66 0.442049
Target:  5'- cGUGUCGAGGCccgccuUGAuagccuGGCUGUUcaaGUCGCCc -3'
miRNA:   3'- -CGCGGCUCCG------ACU------CCGGUAG---UAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 13023 0.67 0.386193
Target:  5'- aGCGCaGuGGC-GAcGGCCucGUCAUCGCg -3'
miRNA:   3'- -CGCGgCuCCGaCU-CCGG--UAGUAGCGg -5'
26997 5' -58.6 NC_005809.1 + 13197 0.7 0.281444
Target:  5'- cGCGCCGAguccgagGGCUGgggcaAGGCCAcCggCGCg -3'
miRNA:   3'- -CGCGGCU-------CCGAC-----UCCGGUaGuaGCGg -5'
26997 5' -58.6 NC_005809.1 + 13274 0.73 0.176361
Target:  5'- aGUGCUG-GGCaaGGGCCAgcaguUCGUCGCCu -3'
miRNA:   3'- -CGCGGCuCCGacUCCGGU-----AGUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 13304 0.71 0.238438
Target:  5'- cGCGCCGGGGCcgGcguuguaggcggcguAGGCUuUCggcagGUCGCCg -3'
miRNA:   3'- -CGCGGCUCCGa-C---------------UCCGGuAG-----UAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 13502 0.69 0.296596
Target:  5'- cGCGCCuuuGGGC-GAGguaagcgguuuGCCGUCcgCGCCg -3'
miRNA:   3'- -CGCGGc--UCCGaCUC-----------CGGUAGuaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.