miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26997 5' -58.6 NC_005809.1 + 41954 1.14 0.000145
Target:  5'- cGCGCCGAGGCUGAGGCCAUCAUCGCCg -3'
miRNA:   3'- -CGCGGCUCCGACUCCGGUAGUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 35225 0.81 0.045442
Target:  5'- aCGCCGAGGUcGAGGCCGcgcUCAagGCCa -3'
miRNA:   3'- cGCGGCUCCGaCUCCGGU---AGUagCGG- -5'
26997 5' -58.6 NC_005809.1 + 3870 0.8 0.052537
Target:  5'- gGCGCCGucGCUGuAGGCCGcgcugcCGUCGCCg -3'
miRNA:   3'- -CGCGGCucCGAC-UCCGGUa-----GUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 15064 0.76 0.095901
Target:  5'- cGCGCCGAGaaGCUGGcGGCCGagGcCGCCg -3'
miRNA:   3'- -CGCGGCUC--CGACU-CCGGUagUaGCGG- -5'
26997 5' -58.6 NC_005809.1 + 16791 0.75 0.113544
Target:  5'- cGCGCCGcGcGCaucGcGGCCAUCGUUGCCg -3'
miRNA:   3'- -CGCGGCuC-CGa--CuCCGGUAGUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 19725 0.75 0.128365
Target:  5'- gGCGCCGcgcaucgcccugcuuGGGCUGGuuGCCGUUGUUGCCg -3'
miRNA:   3'- -CGCGGC---------------UCCGACUc-CGGUAGUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 30335 0.74 0.141801
Target:  5'- cGCGUCGGGGuCUuuGGCCuuGUCGUCGCg -3'
miRNA:   3'- -CGCGGCUCC-GAcuCCGG--UAGUAGCGg -5'
26997 5' -58.6 NC_005809.1 + 13274 0.73 0.176361
Target:  5'- aGUGCUG-GGCaaGGGCCAgcaguUCGUCGCCu -3'
miRNA:   3'- -CGCGGCuCCGacUCCGGU-----AGUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 12593 0.73 0.181173
Target:  5'- cCGuUCGAcGGCUGcauccAGGCCGUCGUgCGCCg -3'
miRNA:   3'- cGC-GGCU-CCGAC-----UCCGGUAGUA-GCGG- -5'
26997 5' -58.6 NC_005809.1 + 18973 0.72 0.186102
Target:  5'- --aCCgGGGGCUGcacgcaugacGGCCAUCGUCGCCc -3'
miRNA:   3'- cgcGG-CUCCGACu---------CCGGUAGUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 19019 0.72 0.190639
Target:  5'- cUGCCGGcgaugucGGCcGAGGCCAUCGaccgcgugCGCCg -3'
miRNA:   3'- cGCGGCU-------CCGaCUCCGGUAGUa-------GCGG- -5'
26997 5' -58.6 NC_005809.1 + 20263 0.72 0.191149
Target:  5'- -gGCUGuuGCUGcuguuGGCCGUCGUUGCCc -3'
miRNA:   3'- cgCGGCucCGACu----CCGGUAGUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 19357 0.72 0.207014
Target:  5'- -gGCCGAGGCcGAGGCCGaauUCAccgacgagGCCg -3'
miRNA:   3'- cgCGGCUCCGaCUCCGGU---AGUag------CGG- -5'
26997 5' -58.6 NC_005809.1 + 37664 0.71 0.218214
Target:  5'- cGCuGCCGAcguuuccaccguGGCcgaaaacGAGGCCGcCGUCGCCg -3'
miRNA:   3'- -CG-CGGCU------------CCGa------CUCCGGUaGUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 35712 0.71 0.228732
Target:  5'- cGUGCCGAcguGGUggGGGGCCuacgaaaaggcCGUCGCCg -3'
miRNA:   3'- -CGCGGCU---CCGa-CUCCGGua---------GUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 34619 0.71 0.229927
Target:  5'- cGCGCCGAGGCcacGGGcaaGCUGUCGgaaauccucgCGCCg -3'
miRNA:   3'- -CGCGGCUCCGa--CUC---CGGUAGUa---------GCGG- -5'
26997 5' -58.6 NC_005809.1 + 13304 0.71 0.238438
Target:  5'- cGCGCCGGGGCcgGcguuguaggcggcguAGGCUuUCggcagGUCGCCg -3'
miRNA:   3'- -CGCGGCUCCGa-C---------------UCCGGuAG-----UAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 34544 0.71 0.242166
Target:  5'- aGCGUCGAGGCUGucaccGGCgAagCuggCGCCa -3'
miRNA:   3'- -CGCGGCUCCGACu----CCGgUa-Gua-GCGG- -5'
26997 5' -58.6 NC_005809.1 + 28824 0.7 0.248487
Target:  5'- cGCGCCGucgucGGGUUGcGGCCGgacUUGCCg -3'
miRNA:   3'- -CGCGGC-----UCCGACuCCGGUaguAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 35345 0.7 0.257565
Target:  5'- uCGCCGAGGgUGAGcgcggcgcagaugcuGCCGUggaCAUCGCg -3'
miRNA:   3'- cGCGGCUCCgACUC---------------CGGUA---GUAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.