miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26998 3' -55.1 NC_005809.1 + 10909 0.66 0.686693
Target:  5'- uGCUuguGGCCggUGUaGGCCCaccaaGCGGCa -3'
miRNA:   3'- gUGAuu-CUGGuuGCA-CCGGG-----CGCUGc -5'
26998 3' -55.1 NC_005809.1 + 31042 0.66 0.685588
Target:  5'- uCGCgcGGGCCAACGUgcgcgaaGGCCCGa-ACa -3'
miRNA:   3'- -GUGauUCUGGUUGCA-------CCGGGCgcUGc -5'
26998 3' -55.1 NC_005809.1 + 10147 0.66 0.653373
Target:  5'- uCGCUGccgucgucuuGGCaGACGUGGCgCGCGGCu -3'
miRNA:   3'- -GUGAUu---------CUGgUUGCACCGgGCGCUGc -5'
26998 3' -55.1 NC_005809.1 + 24461 0.66 0.642211
Target:  5'- aCAUUGAcGCCGACGaccugcugcuUGGCCUGCGcCa -3'
miRNA:   3'- -GUGAUUcUGGUUGC----------ACCGGGCGCuGc -5'
26998 3' -55.1 NC_005809.1 + 33154 0.66 0.642211
Target:  5'- aCGCUAuucaAGACCuGCaa-GCCCGCGGCc -3'
miRNA:   3'- -GUGAU----UCUGGuUGcacCGGGCGCUGc -5'
26998 3' -55.1 NC_005809.1 + 13212 0.66 0.635509
Target:  5'- gGCUGGGgcaaggccACCGGCGcgugguucgaggacuUGGCCgGCGACc -3'
miRNA:   3'- gUGAUUC--------UGGUUGC---------------ACCGGgCGCUGc -5'
26998 3' -55.1 NC_005809.1 + 16047 0.66 0.63104
Target:  5'- gUugU-AGGCCAguucgcgcACGUGGCCgccgcgCGCGGCGc -3'
miRNA:   3'- -GugAuUCUGGU--------UGCACCGG------GCGCUGC- -5'
26998 3' -55.1 NC_005809.1 + 36155 0.66 0.63104
Target:  5'- gAC-AGGcGCCAACGacaUGGgCCGCGACu -3'
miRNA:   3'- gUGaUUC-UGGUUGC---ACCgGGCGCUGc -5'
26998 3' -55.1 NC_005809.1 + 25498 0.67 0.61987
Target:  5'- uGCUuGG-UCAGgGUcaGGCCCGCGAUGa -3'
miRNA:   3'- gUGAuUCuGGUUgCA--CCGGGCGCUGC- -5'
26998 3' -55.1 NC_005809.1 + 36997 0.67 0.608711
Target:  5'- aCACgguggcGGCCAGCGuUGGCgccgucgauaCCGUGGCGg -3'
miRNA:   3'- -GUGauu---CUGGUUGC-ACCG----------GGCGCUGC- -5'
26998 3' -55.1 NC_005809.1 + 12006 0.67 0.597572
Target:  5'- cCACgucGGCCAGCagcgcggccGUGGCCgGCGAgGu -3'
miRNA:   3'- -GUGauuCUGGUUG---------CACCGGgCGCUgC- -5'
26998 3' -55.1 NC_005809.1 + 13667 0.67 0.597572
Target:  5'- uUugUGGGACga--GUGGUCgGCGACGg -3'
miRNA:   3'- -GugAUUCUGguugCACCGGgCGCUGC- -5'
26998 3' -55.1 NC_005809.1 + 37692 0.67 0.586464
Target:  5'- ---aAGGACgCAugauuGCGUGGCUCGcCGGCGa -3'
miRNA:   3'- gugaUUCUG-GU-----UGCACCGGGC-GCUGC- -5'
26998 3' -55.1 NC_005809.1 + 31904 0.67 0.586464
Target:  5'- cCAUcGAGGCCGA-GU-GCCUGCGGCGu -3'
miRNA:   3'- -GUGaUUCUGGUUgCAcCGGGCGCUGC- -5'
26998 3' -55.1 NC_005809.1 + 6617 0.67 0.575396
Target:  5'- -----uGACCAGCG-GGCgCGUGGCGc -3'
miRNA:   3'- gugauuCUGGUUGCaCCGgGCGCUGC- -5'
26998 3' -55.1 NC_005809.1 + 8975 0.67 0.575396
Target:  5'- ------uGCCAGCGUGGCcgugCCGCGAUa -3'
miRNA:   3'- gugauucUGGUUGCACCG----GGCGCUGc -5'
26998 3' -55.1 NC_005809.1 + 40416 0.67 0.575396
Target:  5'- aACUGuucGCCAACGUGuaCgGCGGCGc -3'
miRNA:   3'- gUGAUuc-UGGUUGCACcgGgCGCUGC- -5'
26998 3' -55.1 NC_005809.1 + 1707 0.68 0.564375
Target:  5'- uCGCcguGGGCCGGCGU-GCCgGCGAgGg -3'
miRNA:   3'- -GUGau-UCUGGUUGCAcCGGgCGCUgC- -5'
26998 3' -55.1 NC_005809.1 + 7377 0.68 0.531683
Target:  5'- -----cGuCCAGCGgcgGGCaCCGCGGCGa -3'
miRNA:   3'- gugauuCuGGUUGCa--CCG-GGCGCUGC- -5'
26998 3' -55.1 NC_005809.1 + 12602 0.68 0.531683
Target:  5'- gGCUGcauccAGGCCGuCGU-GCgCCGCGACGa -3'
miRNA:   3'- gUGAU-----UCUGGUuGCAcCG-GGCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.