miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27016 3' -62.9 NC_005832.1 + 97712 0.67 0.4958
Target:  5'- uUGAgCUGGGAUGCCGCggccgccaUCUGGGCUa- -3'
miRNA:   3'- gGCU-GGUCCUGCGGCG--------GGACCCGAgg -5'
27016 3' -62.9 NC_005832.1 + 90913 0.67 0.4958
Target:  5'- cUCGGCCgAGGGCGg-GCCCcucagGaGGCUCCu -3'
miRNA:   3'- -GGCUGG-UCCUGCggCGGGa----C-CCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 5083 0.67 0.494873
Target:  5'- gUGGCCAGGAUGagcucgggaggcaUCGUCUcGGGCUCg -3'
miRNA:   3'- gGCUGGUCCUGC-------------GGCGGGaCCCGAGg -5'
27016 3' -62.9 NC_005832.1 + 66995 0.67 0.485647
Target:  5'- aCGGCCAGGAcuuccaaacguccCGCUgcgaggGCCCUGgcGGCggCCg -3'
miRNA:   3'- gGCUGGUCCU-------------GCGG------CGGGAC--CCGa-GG- -5'
27016 3' -62.9 NC_005832.1 + 9750 0.67 0.485647
Target:  5'- aCGACCugaGGGACaGCCuGCCCcaggaugUGGaggaGCUCCu -3'
miRNA:   3'- gGCUGG---UCCUG-CGG-CGGG-------ACC----CGAGG- -5'
27016 3' -62.9 NC_005832.1 + 47078 0.67 0.477414
Target:  5'- aCGACguGGGCGCCuauguaGUCUUcgucGGGCUCg -3'
miRNA:   3'- gGCUGguCCUGCGG------CGGGA----CCCGAGg -5'
27016 3' -62.9 NC_005832.1 + 55988 0.67 0.474685
Target:  5'- gCCaGACaCGGGgcccgcguagccguACGCgGCCCUGGGUcuugCCc -3'
miRNA:   3'- -GG-CUG-GUCC--------------UGCGgCGGGACCCGa---GG- -5'
27016 3' -62.9 NC_005832.1 + 12766 0.67 0.468348
Target:  5'- gCCGugCAGGGCcCCGCacgCCaGGGCgUCa -3'
miRNA:   3'- -GGCugGUCCUGcGGCG---GGaCCCG-AGg -5'
27016 3' -62.9 NC_005832.1 + 477 0.67 0.459371
Target:  5'- -aGcCCAGGGCGgCGUCCUggucgGGGCcCCu -3'
miRNA:   3'- ggCuGGUCCUGCgGCGGGA-----CCCGaGG- -5'
27016 3' -62.9 NC_005832.1 + 94912 0.68 0.454029
Target:  5'- cCCGAUCAGGccGCGUCgGCCCucgcgcagauccuccUGGGCcugcagucccUCCa -3'
miRNA:   3'- -GGCUGGUCC--UGCGG-CGGG---------------ACCCG----------AGG- -5'
27016 3' -62.9 NC_005832.1 + 86524 0.68 0.441698
Target:  5'- gCGGCCAaGaACGaaGCCUUGGGCgCCu -3'
miRNA:   3'- gGCUGGUcC-UGCggCGGGACCCGaGG- -5'
27016 3' -62.9 NC_005832.1 + 56325 0.68 0.424415
Target:  5'- aCgGGCCugGGGACGuaGCCCaGGGCcacugcUCCu -3'
miRNA:   3'- -GgCUGG--UCCUGCggCGGGaCCCG------AGG- -5'
27016 3' -62.9 NC_005832.1 + 92352 0.68 0.415084
Target:  5'- -gGACCGGGAgcCGCCGUCUuuaaagaUGGGUgCCc -3'
miRNA:   3'- ggCUGGUCCU--GCGGCGGG-------ACCCGaGG- -5'
27016 3' -62.9 NC_005832.1 + 94097 0.68 0.399267
Target:  5'- aCCGuCgAGGGCGaaGCCCgaaaauaggGGGUUCUg -3'
miRNA:   3'- -GGCuGgUCCUGCggCGGGa--------CCCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 42694 0.69 0.394353
Target:  5'- cCUGGCCAacaagaggguGGACGCCaccgggccccuuaucGCCUUccuucuggacGGGCUCCu -3'
miRNA:   3'- -GGCUGGU----------CCUGCGG---------------CGGGA----------CCCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 97253 0.69 0.359535
Target:  5'- aCGACCuGGACGCCGUagucgccagCCUGGcCggCCu -3'
miRNA:   3'- gGCUGGuCCUGCGGCG---------GGACCcGa-GG- -5'
27016 3' -62.9 NC_005832.1 + 43266 0.69 0.351927
Target:  5'- gUGGCCAGcACgGCCuCCCUGGGUgucUCCa -3'
miRNA:   3'- gGCUGGUCcUG-CGGcGGGACCCG---AGG- -5'
27016 3' -62.9 NC_005832.1 + 48169 0.7 0.337056
Target:  5'- uUGACCAGGACGUCugagGCCUUucGGGCgucgaaCCa -3'
miRNA:   3'- gGCUGGUCCUGCGG----CGGGA--CCCGa-----GG- -5'
27016 3' -62.9 NC_005832.1 + 52797 0.7 0.337056
Target:  5'- gCGucCCGGGGCcauGCUGCCCagGGGCUUg -3'
miRNA:   3'- gGCu-GGUCCUG---CGGCGGGa-CCCGAGg -5'
27016 3' -62.9 NC_005832.1 + 11681 0.7 0.329794
Target:  5'- gCCGuCCAGGACGaccCCGCCUUuGGCcaCCa -3'
miRNA:   3'- -GGCuGGUCCUGC---GGCGGGAcCCGa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.