miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27016 3' -62.9 NC_005832.1 + 33580 0.66 0.514499
Target:  5'- aCCuACCuGGACGCCcuGCCUUuGGCcgCCa -3'
miRNA:   3'- -GGcUGGuCCUGCGG--CGGGAcCCGa-GG- -5'
27016 3' -62.9 NC_005832.1 + 36062 0.75 0.155842
Target:  5'- -gGGCCGGGugGaCGCuCCUGGGCUggaCCa -3'
miRNA:   3'- ggCUGGUCCugCgGCG-GGACCCGA---GG- -5'
27016 3' -62.9 NC_005832.1 + 36648 0.66 0.523957
Target:  5'- nCCGGCCcuGGcguACGCCGCCUccGuGGCcgCCg -3'
miRNA:   3'- -GGCUGGu-CC---UGCGGCGGGa-C-CCGa-GG- -5'
27016 3' -62.9 NC_005832.1 + 36678 0.72 0.240235
Target:  5'- aCUGAgCAGGuACGCCaacGCCCUGuGGCcCCc -3'
miRNA:   3'- -GGCUgGUCC-UGCGG---CGGGAC-CCGaGG- -5'
27016 3' -62.9 NC_005832.1 + 39430 0.66 0.521113
Target:  5'- cCCG-CCAGGugGaCguggacuccgucugCGCCCgcgGGGCcCCu -3'
miRNA:   3'- -GGCuGGUCCugC-G--------------GCGGGa--CCCGaGG- -5'
27016 3' -62.9 NC_005832.1 + 40917 0.71 0.288661
Target:  5'- cCCGACCGGGuaaGCgGCCGCuaggucguaaCCcGcGGCUCCa -3'
miRNA:   3'- -GGCUGGUCC---UG-CGGCG----------GGaC-CCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 41418 0.66 0.53348
Target:  5'- aUGACUaccgAGGGCGCCuCCCUGacGGCggcggCCu -3'
miRNA:   3'- gGCUGG----UCCUGCGGcGGGAC--CCGa----GG- -5'
27016 3' -62.9 NC_005832.1 + 41968 0.66 0.562394
Target:  5'- gCCGGggugagcuucucCCAGGGuuUGCCGUCUgggcacggGGGCUCg -3'
miRNA:   3'- -GGCU------------GGUCCU--GCGGCGGGa-------CCCGAGg -5'
27016 3' -62.9 NC_005832.1 + 42694 0.66 0.542103
Target:  5'- uCCGGCCAGGAUGugccuaacguaguCCuCCUUGGaGC-CCu -3'
miRNA:   3'- -GGCUGGUCCUGC-------------GGcGGGACC-CGaGG- -5'
27016 3' -62.9 NC_005832.1 + 42694 0.69 0.394353
Target:  5'- cCUGGCCAacaagaggguGGACGCCaccgggccccuuaucGCCUUccuucuggacGGGCUCCu -3'
miRNA:   3'- -GGCUGGU----------CCUGCGG---------------CGGGA----------CCCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 43266 0.69 0.351927
Target:  5'- gUGGCCAGcACgGCCuCCCUGGGUgucUCCa -3'
miRNA:   3'- gGCUGGUCcUG-CGGcGGGACCCG---AGG- -5'
27016 3' -62.9 NC_005832.1 + 45789 0.67 0.505112
Target:  5'- -gGGCCAGGGC-CUGUCCgagaGGCUCg -3'
miRNA:   3'- ggCUGGUCCUGcGGCGGGac--CCGAGg -5'
27016 3' -62.9 NC_005832.1 + 47078 0.67 0.477414
Target:  5'- aCGACguGGGCGCCuauguaGUCUUcgucGGGCUCg -3'
miRNA:   3'- gGCUGguCCUGCGG------CGGGA----CCCGAGg -5'
27016 3' -62.9 NC_005832.1 + 47550 0.73 0.218669
Target:  5'- gUGGCCGGGACGCU--CCUGGGCagCa -3'
miRNA:   3'- gGCUGGUCCUGCGGcgGGACCCGagG- -5'
27016 3' -62.9 NC_005832.1 + 47788 0.71 0.282211
Target:  5'- cUCGGCCAGGACcuCCGCCUcgGGGUagUCg -3'
miRNA:   3'- -GGCUGGUCCUGc-GGCGGGa-CCCG--AGg -5'
27016 3' -62.9 NC_005832.1 + 48169 0.7 0.337056
Target:  5'- uUGACCAGGACGUCugagGCCUUucGGGCgucgaaCCa -3'
miRNA:   3'- gGCUGGUCCUGCGG----CGGGA--CCCGa-----GG- -5'
27016 3' -62.9 NC_005832.1 + 52797 0.7 0.337056
Target:  5'- gCGucCCGGGGCcauGCUGCCCagGGGCUUg -3'
miRNA:   3'- gGCu-GGUCCUG---CGGCGGGa-CCCGAGg -5'
27016 3' -62.9 NC_005832.1 + 54508 0.8 0.074798
Target:  5'- uCCGAgaaCCccaagaGGGACGCCGCCCUGGccgacaggauGCUCCu -3'
miRNA:   3'- -GGCU---GG------UCCUGCGGCGGGACC----------CGAGG- -5'
27016 3' -62.9 NC_005832.1 + 54648 0.76 0.124566
Target:  5'- gUCGGCCAGGGCGgCGuCCCUcuugGGGUUCUc -3'
miRNA:   3'- -GGCUGGUCCUGCgGC-GGGA----CCCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 55833 0.66 0.53348
Target:  5'- gCCGGUCAGGGcCGCCGUgguggUGGGgUCCa -3'
miRNA:   3'- -GGCUGGUCCU-GCGGCGgg---ACCCgAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.