miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27016 3' -62.9 NC_005832.1 + 477 0.67 0.459371
Target:  5'- -aGcCCAGGGCGgCGUCCUggucgGGGCcCCu -3'
miRNA:   3'- ggCuGGUCCUGCgGCGGGA-----CCCGaGG- -5'
27016 3' -62.9 NC_005832.1 + 606 1.12 0.000333
Target:  5'- cCCGACCAGGACGCCGCCCUGGGCUCCu -3'
miRNA:   3'- -GGCUGGUCCUGCGGCGGGACCCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 1258 0.72 0.257551
Target:  5'- gCCGACCuguccucgcGGGACGCCGgC-UGGGCcaCCa -3'
miRNA:   3'- -GGCUGG---------UCCUGCGGCgGgACCCGa-GG- -5'
27016 3' -62.9 NC_005832.1 + 3163 0.66 0.543064
Target:  5'- cCCaGAUCAGGGCGUCGgucguaugcuuuUCCUGGGUa-- -3'
miRNA:   3'- -GG-CUGGUCCUGCGGC------------GGGACCCGagg -5'
27016 3' -62.9 NC_005832.1 + 5066 0.73 0.223901
Target:  5'- aUGACCAGGAUGCCgGUCCUGc-CUCCc -3'
miRNA:   3'- gGCUGGUCCUGCGG-CGGGACccGAGG- -5'
27016 3' -62.9 NC_005832.1 + 5083 0.67 0.494873
Target:  5'- gUGGCCAGGAUGagcucgggaggcaUCGUCUcGGGCUCg -3'
miRNA:   3'- gGCUGGUCCUGC-------------GGCGGGaCCCGAGg -5'
27016 3' -62.9 NC_005832.1 + 6036 0.76 0.134285
Target:  5'- -gGugCAGGACGgCGUgCUGGGCUgCCa -3'
miRNA:   3'- ggCugGUCCUGCgGCGgGACCCGA-GG- -5'
27016 3' -62.9 NC_005832.1 + 6577 0.66 0.552703
Target:  5'- cCCGACaaCAGGAUgGCCGUcauguCCaGGGC-CCa -3'
miRNA:   3'- -GGCUG--GUCCUG-CGGCG-----GGaCCCGaGG- -5'
27016 3' -62.9 NC_005832.1 + 8276 0.66 0.566283
Target:  5'- cCCGGCuCccgucaggauaucuaGGGACuccucgaagGCCGCCCUgcucaGGGgUCCg -3'
miRNA:   3'- -GGCUG-G---------------UCCUG---------CGGCGGGA-----CCCgAGG- -5'
27016 3' -62.9 NC_005832.1 + 9750 0.67 0.485647
Target:  5'- aCGACCugaGGGACaGCCuGCCCcaggaugUGGaggaGCUCCu -3'
miRNA:   3'- gGCUGG---UCCUG-CGG-CGGG-------ACC----CGAGG- -5'
27016 3' -62.9 NC_005832.1 + 11681 0.7 0.329794
Target:  5'- gCCGuCCAGGACGaccCCGCCUUuGGCcaCCa -3'
miRNA:   3'- -GGCuGGUCCUGC---GGCGGGAcCCGa-GG- -5'
27016 3' -62.9 NC_005832.1 + 12766 0.67 0.468348
Target:  5'- gCCGugCAGGGCcCCGCacgCCaGGGCgUCa -3'
miRNA:   3'- -GGCugGUCCUGcGGCG---GGaCCCG-AGg -5'
27016 3' -62.9 NC_005832.1 + 17414 0.66 0.556574
Target:  5'- cCCGACCuGGGAacgccgaccgaaaacUGCUGCCCgaaagccGGGUUgCCc -3'
miRNA:   3'- -GGCUGG-UCCU---------------GCGGCGGGa------CCCGA-GG- -5'
27016 3' -62.9 NC_005832.1 + 19713 0.66 0.523957
Target:  5'- aCCGGCCAagaccgucagggGGAcCGUCagGCCCagGGGCUUUg -3'
miRNA:   3'- -GGCUGGU------------CCU-GCGG--CGGGa-CCCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 20965 0.67 0.504178
Target:  5'- cCUGACCgcaaagAGGACGCCugaacugGCUCUGucCUCCa -3'
miRNA:   3'- -GGCUGG------UCCUGCGG-------CGGGACccGAGG- -5'
27016 3' -62.9 NC_005832.1 + 21229 0.72 0.263546
Target:  5'- aCGGCCGGGGCGUC-CCUacGGGCcCCg -3'
miRNA:   3'- gGCUGGUCCUGCGGcGGGa-CCCGaGG- -5'
27016 3' -62.9 NC_005832.1 + 24816 0.66 0.514499
Target:  5'- aCGACCAacccucucucuGGGCGCagGCUUUGGGCa-- -3'
miRNA:   3'- gGCUGGU-----------CCUGCGg-CGGGACCCGagg -5'
27016 3' -62.9 NC_005832.1 + 26589 0.71 0.295227
Target:  5'- gCCG-CCGGGugGCUGCCCgacaCUCCc -3'
miRNA:   3'- -GGCuGGUCCugCGGCGGGacccGAGG- -5'
27016 3' -62.9 NC_005832.1 + 32576 0.67 0.505112
Target:  5'- gCGGCCAGGuacugccuccuCGCgGCCuCUGGaGCggUCCc -3'
miRNA:   3'- gGCUGGUCCu----------GCGgCGG-GACC-CG--AGG- -5'
27016 3' -62.9 NC_005832.1 + 33089 0.7 0.322649
Target:  5'- uUGACCgGGGugGCCGUCCaguuccugaUGGGCcucgcUCCc -3'
miRNA:   3'- gGCUGG-UCCugCGGCGGG---------ACCCG-----AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.