Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27016 | 3' | -62.9 | NC_005832.1 | + | 606 | 1.12 | 0.000333 |
Target: 5'- cCCGACCAGGACGCCGCCCUGGGCUCCu -3' miRNA: 3'- -GGCUGGUCCUGCGGCGGGACCCGAGG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 54508 | 0.8 | 0.074798 |
Target: 5'- uCCGAgaaCCccaagaGGGACGCCGCCCUGGccgacaggauGCUCCu -3' miRNA: 3'- -GGCU---GG------UCCUGCGGCGGGACC----------CGAGG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 67070 | 0.78 | 0.104374 |
Target: 5'- cCUGACCuGGACGCCgagGCCCUGGaggccaCUCCg -3' miRNA: 3'- -GGCUGGuCCUGCGG---CGGGACCc-----GAGG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 54648 | 0.76 | 0.124566 |
Target: 5'- gUCGGCCAGGGCGgCGuCCCUcuugGGGUUCUc -3' miRNA: 3'- -GGCUGGUCCUGCgGC-GGGA----CCCGAGG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 6036 | 0.76 | 0.134285 |
Target: 5'- -gGugCAGGACGgCGUgCUGGGCUgCCa -3' miRNA: 3'- ggCugGUCCUGCgGCGgGACCCGA-GG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 36062 | 0.75 | 0.155842 |
Target: 5'- -gGGCCGGGugGaCGCuCCUGGGCUggaCCa -3' miRNA: 3'- ggCUGGUCCugCgGCG-GGACCCGA---GG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 87633 | 0.75 | 0.167759 |
Target: 5'- gCCGccaGCCuggAGGACGCUGCCCUGGuccucGCgUCCa -3' miRNA: 3'- -GGC---UGG---UCCUGCGGCGGGACC-----CG-AGG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 74135 | 0.73 | 0.203113 |
Target: 5'- aCGAuCCAGGACGCCGgcacaCCCcugucugucaugaUGGGgUCCa -3' miRNA: 3'- gGCU-GGUCCUGCGGC-----GGG-------------ACCCgAGG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 47550 | 0.73 | 0.218669 |
Target: 5'- gUGGCCGGGACGCU--CCUGGGCagCa -3' miRNA: 3'- gGCUGGUCCUGCGGcgGGACCCGagG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 5066 | 0.73 | 0.223901 |
Target: 5'- aUGACCAGGAUGCCgGUCCUGc-CUCCc -3' miRNA: 3'- gGCUGGUCCUGCGG-CGGGACccGAGG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 95931 | 0.72 | 0.229238 |
Target: 5'- gCGGCCAGGGCaGCaaGCCCgaGGGCagCCa -3' miRNA: 3'- gGCUGGUCCUG-CGg-CGGGa-CCCGa-GG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 36678 | 0.72 | 0.240235 |
Target: 5'- aCUGAgCAGGuACGCCaacGCCCUGuGGCcCCc -3' miRNA: 3'- -GGCUgGUCC-UGCGG---CGGGAC-CCGaGG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 92544 | 0.72 | 0.251668 |
Target: 5'- gCGACgGGGACG--GCUCUGGGCUgCCu -3' miRNA: 3'- gGCUGgUCCUGCggCGGGACCCGA-GG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 1258 | 0.72 | 0.257551 |
Target: 5'- gCCGACCuguccucgcGGGACGCCGgC-UGGGCcaCCa -3' miRNA: 3'- -GGCUGG---------UCCUGCGGCgGgACCCGa-GG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 88203 | 0.72 | 0.257551 |
Target: 5'- aCCGACagaCAGGGagcagGCCGCUUUGGGUUCg -3' miRNA: 3'- -GGCUG---GUCCUg----CGGCGGGACCCGAGg -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 21229 | 0.72 | 0.263546 |
Target: 5'- aCGGCCGGGGCGUC-CCUacGGGCcCCg -3' miRNA: 3'- gGCUGGUCCUGCGGcGGGa-CCCGaGG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 72563 | 0.71 | 0.269654 |
Target: 5'- cCCG-UgGGGACGUgGggcCCCUGGGCUUCa -3' miRNA: 3'- -GGCuGgUCCUGCGgC---GGGACCCGAGG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 47788 | 0.71 | 0.282211 |
Target: 5'- cUCGGCCAGGACcuCCGCCUcgGGGUagUCg -3' miRNA: 3'- -GGCUGGUCCUGc-GGCGGGa-CCCG--AGg -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 40917 | 0.71 | 0.288661 |
Target: 5'- cCCGACCGGGuaaGCgGCCGCuaggucguaaCCcGcGGCUCCa -3' miRNA: 3'- -GGCUGGUCC---UG-CGGCG----------GGaC-CCGAGG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 26589 | 0.71 | 0.295227 |
Target: 5'- gCCG-CCGGGugGCUGCCCgacaCUCCc -3' miRNA: 3'- -GGCuGGUCCugCGGCGGGacccGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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