miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27016 3' -62.9 NC_005832.1 + 47078 0.67 0.477414
Target:  5'- aCGACguGGGCGCCuauguaGUCUUcgucGGGCUCg -3'
miRNA:   3'- gGCUGguCCUGCGG------CGGGA----CCCGAGg -5'
27016 3' -62.9 NC_005832.1 + 97253 0.69 0.359535
Target:  5'- aCGACCuGGACGCCGUagucgccagCCUGGcCggCCu -3'
miRNA:   3'- gGCUGGuCCUGCGGCG---------GGACCcGa-GG- -5'
27016 3' -62.9 NC_005832.1 + 42694 0.69 0.394353
Target:  5'- cCUGGCCAacaagaggguGGACGCCaccgggccccuuaucGCCUUccuucuggacGGGCUCCu -3'
miRNA:   3'- -GGCUGGU----------CCUGCGG---------------CGGGA----------CCCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 94097 0.68 0.399267
Target:  5'- aCCGuCgAGGGCGaaGCCCgaaaauaggGGGUUCUg -3'
miRNA:   3'- -GGCuGgUCCUGCggCGGGa--------CCCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 56325 0.68 0.424415
Target:  5'- aCgGGCCugGGGACGuaGCCCaGGGCcacugcUCCu -3'
miRNA:   3'- -GgCUGG--UCCUGCggCGGGaCCCG------AGG- -5'
27016 3' -62.9 NC_005832.1 + 86524 0.68 0.441698
Target:  5'- gCGGCCAaGaACGaaGCCUUGGGCgCCu -3'
miRNA:   3'- gGCUGGUcC-UGCggCGGGACCCGaGG- -5'
27016 3' -62.9 NC_005832.1 + 477 0.67 0.459371
Target:  5'- -aGcCCAGGGCGgCGUCCUggucgGGGCcCCu -3'
miRNA:   3'- ggCuGGUCCUGCgGCGGGA-----CCCGaGG- -5'
27016 3' -62.9 NC_005832.1 + 12766 0.67 0.468348
Target:  5'- gCCGugCAGGGCcCCGCacgCCaGGGCgUCa -3'
miRNA:   3'- -GGCugGUCCUGcGGCG---GGaCCCG-AGg -5'
27016 3' -62.9 NC_005832.1 + 55988 0.67 0.474685
Target:  5'- gCCaGACaCGGGgcccgcguagccguACGCgGCCCUGGGUcuugCCc -3'
miRNA:   3'- -GG-CUG-GUCC--------------UGCGgCGGGACCCGa---GG- -5'
27016 3' -62.9 NC_005832.1 + 52797 0.7 0.337056
Target:  5'- gCGucCCGGGGCcauGCUGCCCagGGGCUUg -3'
miRNA:   3'- gGCu-GGUCCUG---CGGCGGGa-CCCGAGg -5'
27016 3' -62.9 NC_005832.1 + 48169 0.7 0.337056
Target:  5'- uUGACCAGGACGUCugagGCCUUucGGGCgucgaaCCa -3'
miRNA:   3'- gGCUGGUCCUGCGG----CGGGA--CCCGa-----GG- -5'
27016 3' -62.9 NC_005832.1 + 40917 0.71 0.288661
Target:  5'- cCCGACCGGGuaaGCgGCCGCuaggucguaaCCcGcGGCUCCa -3'
miRNA:   3'- -GGCUGGUCC---UG-CGGCG----------GGaC-CCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 67070 0.78 0.104374
Target:  5'- cCUGACCuGGACGCCgagGCCCUGGaggccaCUCCg -3'
miRNA:   3'- -GGCUGGuCCUGCGG---CGGGACCc-----GAGG- -5'
27016 3' -62.9 NC_005832.1 + 6036 0.76 0.134285
Target:  5'- -gGugCAGGACGgCGUgCUGGGCUgCCa -3'
miRNA:   3'- ggCugGUCCUGCgGCGgGACCCGA-GG- -5'
27016 3' -62.9 NC_005832.1 + 36062 0.75 0.155842
Target:  5'- -gGGCCGGGugGaCGCuCCUGGGCUggaCCa -3'
miRNA:   3'- ggCUGGUCCugCgGCG-GGACCCGA---GG- -5'
27016 3' -62.9 NC_005832.1 + 74135 0.73 0.203113
Target:  5'- aCGAuCCAGGACGCCGgcacaCCCcugucugucaugaUGGGgUCCa -3'
miRNA:   3'- gGCU-GGUCCUGCGGC-----GGG-------------ACCCgAGG- -5'
27016 3' -62.9 NC_005832.1 + 5066 0.73 0.223901
Target:  5'- aUGACCAGGAUGCCgGUCCUGc-CUCCc -3'
miRNA:   3'- gGCUGGUCCUGCGG-CGGGACccGAGG- -5'
27016 3' -62.9 NC_005832.1 + 88203 0.72 0.257551
Target:  5'- aCCGACagaCAGGGagcagGCCGCUUUGGGUUCg -3'
miRNA:   3'- -GGCUG---GUCCUg----CGGCGGGACCCGAGg -5'
27016 3' -62.9 NC_005832.1 + 72563 0.71 0.269654
Target:  5'- cCCG-UgGGGACGUgGggcCCCUGGGCUUCa -3'
miRNA:   3'- -GGCuGgUCCUGCGgC---GGGACCCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 47788 0.71 0.282211
Target:  5'- cUCGGCCAGGACcuCCGCCUcgGGGUagUCg -3'
miRNA:   3'- -GGCUGGUCCUGc-GGCGGGa-CCCG--AGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.