miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27016 3' -62.9 NC_005832.1 + 606 1.12 0.000333
Target:  5'- cCCGACCAGGACGCCGCCCUGGGCUCCu -3'
miRNA:   3'- -GGCUGGUCCUGCGGCGGGACCCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 90913 0.67 0.4958
Target:  5'- cUCGGCCgAGGGCGg-GCCCcucagGaGGCUCCu -3'
miRNA:   3'- -GGCUGG-UCCUGCggCGGGa----C-CCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 45789 0.67 0.505112
Target:  5'- -gGGCCAGGGC-CUGUCCgagaGGCUCg -3'
miRNA:   3'- ggCUGGUCCUGcGGCGGGac--CCGAGg -5'
27016 3' -62.9 NC_005832.1 + 8276 0.66 0.566283
Target:  5'- cCCGGCuCccgucaggauaucuaGGGACuccucgaagGCCGCCCUgcucaGGGgUCCg -3'
miRNA:   3'- -GGCUG-G---------------UCCUG---------CGGCGGGA-----CCCgAGG- -5'
27016 3' -62.9 NC_005832.1 + 95931 0.72 0.229238
Target:  5'- gCGGCCAGGGCaGCaaGCCCgaGGGCagCCa -3'
miRNA:   3'- gGCUGGUCCUG-CGg-CGGGa-CCCGa-GG- -5'
27016 3' -62.9 NC_005832.1 + 36678 0.72 0.240235
Target:  5'- aCUGAgCAGGuACGCCaacGCCCUGuGGCcCCc -3'
miRNA:   3'- -GGCUgGUCC-UGCGG---CGGGAC-CCGaGG- -5'
27016 3' -62.9 NC_005832.1 + 1258 0.72 0.257551
Target:  5'- gCCGACCuguccucgcGGGACGCCGgC-UGGGCcaCCa -3'
miRNA:   3'- -GGCUGG---------UCCUGCGGCgGgACCCGa-GG- -5'
27016 3' -62.9 NC_005832.1 + 21229 0.72 0.263546
Target:  5'- aCGGCCGGGGCGUC-CCUacGGGCcCCg -3'
miRNA:   3'- gGCUGGUCCUGCGGcGGGa-CCCGaGG- -5'
27016 3' -62.9 NC_005832.1 + 11681 0.7 0.329794
Target:  5'- gCCGuCCAGGACGaccCCGCCUUuGGCcaCCa -3'
miRNA:   3'- -GGCuGGUCCUGC---GGCGGGAcCCGa-GG- -5'
27016 3' -62.9 NC_005832.1 + 5083 0.67 0.494873
Target:  5'- gUGGCCAGGAUGagcucgggaggcaUCGUCUcGGGCUCg -3'
miRNA:   3'- gGCUGGUCCUGC-------------GGCGGGaCCCGAGg -5'
27016 3' -62.9 NC_005832.1 + 92352 0.68 0.415084
Target:  5'- -gGACCGGGAgcCGCCGUCUuuaaagaUGGGUgCCc -3'
miRNA:   3'- ggCUGGUCCU--GCGGCGGG-------ACCCGaGG- -5'
27016 3' -62.9 NC_005832.1 + 33089 0.7 0.322649
Target:  5'- uUGACCgGGGugGCCGUCCaguuccugaUGGGCcucgcUCCc -3'
miRNA:   3'- gGCUGG-UCCugCGGCGGG---------ACCCG-----AGG- -5'
27016 3' -62.9 NC_005832.1 + 54648 0.76 0.124566
Target:  5'- gUCGGCCAGGGCGgCGuCCCUcuugGGGUUCUc -3'
miRNA:   3'- -GGCUGGUCCUGCgGC-GGGA----CCCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 94912 0.68 0.454029
Target:  5'- cCCGAUCAGGccGCGUCgGCCCucgcgcagauccuccUGGGCcugcagucccUCCa -3'
miRNA:   3'- -GGCUGGUCC--UGCGG-CGGG---------------ACCCG----------AGG- -5'
27016 3' -62.9 NC_005832.1 + 87633 0.75 0.167759
Target:  5'- gCCGccaGCCuggAGGACGCUGCCCUGGuccucGCgUCCa -3'
miRNA:   3'- -GGC---UGG---UCCUGCGGCGGGACC-----CG-AGG- -5'
27016 3' -62.9 NC_005832.1 + 26589 0.71 0.295227
Target:  5'- gCCG-CCGGGugGCUGCCCgacaCUCCc -3'
miRNA:   3'- -GGCuGGUCCugCGGCGGGacccGAGG- -5'
27016 3' -62.9 NC_005832.1 + 9750 0.67 0.485647
Target:  5'- aCGACCugaGGGACaGCCuGCCCcaggaugUGGaggaGCUCCu -3'
miRNA:   3'- gGCUGG---UCCUG-CGG-CGGG-------ACC----CGAGG- -5'
27016 3' -62.9 NC_005832.1 + 97712 0.67 0.4958
Target:  5'- uUGAgCUGGGAUGCCGCggccgccaUCUGGGCUa- -3'
miRNA:   3'- gGCU-GGUCCUGCGGCG--------GGACCCGAgg -5'
27016 3' -62.9 NC_005832.1 + 47550 0.73 0.218669
Target:  5'- gUGGCCGGGACGCU--CCUGGGCagCa -3'
miRNA:   3'- gGCUGGUCCUGCGGcgGGACCCGagG- -5'
27016 3' -62.9 NC_005832.1 + 92544 0.72 0.251668
Target:  5'- gCGACgGGGACG--GCUCUGGGCUgCCu -3'
miRNA:   3'- gGCUGgUCCUGCggCGGGACCCGA-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.