miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27016 3' -62.9 NC_005832.1 + 97712 0.67 0.4958
Target:  5'- uUGAgCUGGGAUGCCGCggccgccaUCUGGGCUa- -3'
miRNA:   3'- gGCU-GGUCCUGCGGCG--------GGACCCGAgg -5'
27016 3' -62.9 NC_005832.1 + 97253 0.69 0.359535
Target:  5'- aCGACCuGGACGCCGUagucgccagCCUGGcCggCCu -3'
miRNA:   3'- gGCUGGuCCUGCGGCG---------GGACCcGa-GG- -5'
27016 3' -62.9 NC_005832.1 + 97079 0.66 0.537306
Target:  5'- -aGGcCCAGGAgGCCcugucgaccucagacGCCCUGGaGCaggCCg -3'
miRNA:   3'- ggCU-GGUCCUgCGG---------------CGGGACC-CGa--GG- -5'
27016 3' -62.9 NC_005832.1 + 95931 0.72 0.229238
Target:  5'- gCGGCCAGGGCaGCaaGCCCgaGGGCagCCa -3'
miRNA:   3'- gGCUGGUCCUG-CGg-CGGGa-CCCGa-GG- -5'
27016 3' -62.9 NC_005832.1 + 94912 0.68 0.454029
Target:  5'- cCCGAUCAGGccGCGUCgGCCCucgcgcagauccuccUGGGCcugcagucccUCCa -3'
miRNA:   3'- -GGCUGGUCC--UGCGG-CGGG---------------ACCCG----------AGG- -5'
27016 3' -62.9 NC_005832.1 + 94097 0.68 0.399267
Target:  5'- aCCGuCgAGGGCGaaGCCCgaaaauaggGGGUUCUg -3'
miRNA:   3'- -GGCuGgUCCUGCggCGGGa--------CCCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 93596 0.66 0.552703
Target:  5'- cCCGugCuagcGGGAgCGaucaUGCUCaGGGCUCCg -3'
miRNA:   3'- -GGCugG----UCCU-GCg---GCGGGaCCCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 92544 0.72 0.251668
Target:  5'- gCGACgGGGACG--GCUCUGGGCUgCCu -3'
miRNA:   3'- gGCUGgUCCUGCggCGGGACCCGA-GG- -5'
27016 3' -62.9 NC_005832.1 + 92352 0.68 0.415084
Target:  5'- -gGACCGGGAgcCGCCGUCUuuaaagaUGGGUgCCc -3'
miRNA:   3'- ggCUGGUCCU--GCGGCGGG-------ACCCGaGG- -5'
27016 3' -62.9 NC_005832.1 + 90913 0.67 0.4958
Target:  5'- cUCGGCCgAGGGCGg-GCCCcucagGaGGCUCCu -3'
miRNA:   3'- -GGCUGG-UCCUGCggCGGGa----C-CCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 88203 0.72 0.257551
Target:  5'- aCCGACagaCAGGGagcagGCCGCUUUGGGUUCg -3'
miRNA:   3'- -GGCUG---GUCCUg----CGGCGGGACCCGAGg -5'
27016 3' -62.9 NC_005832.1 + 87633 0.75 0.167759
Target:  5'- gCCGccaGCCuggAGGACGCUGCCCUGGuccucGCgUCCa -3'
miRNA:   3'- -GGC---UGG---UCCUGCGGCGGGACC-----CG-AGG- -5'
27016 3' -62.9 NC_005832.1 + 86524 0.68 0.441698
Target:  5'- gCGGCCAaGaACGaaGCCUUGGGCgCCu -3'
miRNA:   3'- gGCUGGUcC-UGCggCGGGACCCGaGG- -5'
27016 3' -62.9 NC_005832.1 + 81429 0.66 0.523957
Target:  5'- --cACCGGGACaguaGCCGCUCUuGGC-CCa -3'
miRNA:   3'- ggcUGGUCCUG----CGGCGGGAcCCGaGG- -5'
27016 3' -62.9 NC_005832.1 + 74135 0.73 0.203113
Target:  5'- aCGAuCCAGGACGCCGgcacaCCCcugucugucaugaUGGGgUCCa -3'
miRNA:   3'- gGCU-GGUCCUGCGGC-----GGG-------------ACCCgAGG- -5'
27016 3' -62.9 NC_005832.1 + 72563 0.71 0.269654
Target:  5'- cCCG-UgGGGACGUgGggcCCCUGGGCUUCa -3'
miRNA:   3'- -GGCuGgUCCUGCGgC---GGGACCCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 67165 0.67 0.505112
Target:  5'- cCCGcggcccucGCCAcGGcCGCCGCCa-GGGC-CCu -3'
miRNA:   3'- -GGC--------UGGU-CCuGCGGCGGgaCCCGaGG- -5'
27016 3' -62.9 NC_005832.1 + 67070 0.78 0.104374
Target:  5'- cCUGACCuGGACGCCgagGCCCUGGaggccaCUCCg -3'
miRNA:   3'- -GGCUGGuCCUGCGG---CGGGACCc-----GAGG- -5'
27016 3' -62.9 NC_005832.1 + 66995 0.67 0.485647
Target:  5'- aCGGCCAGGAcuuccaaacguccCGCUgcgaggGCCCUGgcGGCggCCg -3'
miRNA:   3'- gGCUGGUCCU-------------GCGG------CGGGAC--CCGa-GG- -5'
27016 3' -62.9 NC_005832.1 + 56325 0.68 0.424415
Target:  5'- aCgGGCCugGGGACGuaGCCCaGGGCcacugcUCCu -3'
miRNA:   3'- -GgCUGG--UCCUGCggCGGGaCCCG------AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.