Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27019 | 3' | -53.5 | NC_005832.1 | + | 98326 | 0.69 | 0.814352 |
Target: 5'- gGGCCUCGGGucaguuaggcaaacuGCCGUCUcc--GUCCGAc -3' miRNA: 3'- -CUGGGGUCC---------------UGGCAGAauuuCAGGCU- -5' |
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27019 | 3' | -53.5 | NC_005832.1 | + | 96941 | 0.71 | 0.68127 |
Target: 5'- -uUCCCAGGAgCC-UCUUGAAGcCCGAc -3' miRNA: 3'- cuGGGGUCCU-GGcAGAAUUUCaGGCU- -5' |
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27019 | 3' | -53.5 | NC_005832.1 | + | 87633 | 0.69 | 0.828566 |
Target: 5'- aGGCCCCgcAGGACgggaUGUCUuuUGAGGUCCc- -3' miRNA: 3'- -CUGGGG--UCCUG----GCAGA--AUUUCAGGcu -5' |
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27019 | 3' | -53.5 | NC_005832.1 | + | 80893 | 0.67 | 0.884536 |
Target: 5'- aGGCCCCGGGACCcUUUg-----CCGAa -3' miRNA: 3'- -CUGGGGUCCUGGcAGAauuucaGGCU- -5' |
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27019 | 3' | -53.5 | NC_005832.1 | + | 79821 | 0.67 | 0.913827 |
Target: 5'- aGACCCCGGuuaacgcggugacguGGCCGUgUUucaGAGGUCCc- -3' miRNA: 3'- -CUGGGGUC---------------CUGGCAgAA---UUUCAGGcu -5' |
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27019 | 3' | -53.5 | NC_005832.1 | + | 78772 | 0.73 | 0.585894 |
Target: 5'- aACCCCGGGAUgGUUUUGAugaaaGGUCCa- -3' miRNA: 3'- cUGGGGUCCUGgCAGAAUU-----UCAGGcu -5' |
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27019 | 3' | -53.5 | NC_005832.1 | + | 77069 | 0.68 | 0.837203 |
Target: 5'- cGCCCCAGucACCGUCUgacgggccugGAAG-CCGAg -3' miRNA: 3'- cUGGGGUCc-UGGCAGAa---------UUUCaGGCU- -5' |
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27019 | 3' | -53.5 | NC_005832.1 | + | 75750 | 0.74 | 0.554449 |
Target: 5'- cACCgCCAGGGCCGU---GAGGUCCGc -3' miRNA: 3'- cUGG-GGUCCUGGCAgaaUUUCAGGCu -5' |
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27019 | 3' | -53.5 | NC_005832.1 | + | 73096 | 0.69 | 0.810726 |
Target: 5'- gGGCCCCgAGGACCc---UGGGGUCCGu -3' miRNA: 3'- -CUGGGG-UCCUGGcagaAUUUCAGGCu -5' |
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27019 | 3' | -53.5 | NC_005832.1 | + | 72868 | 0.68 | 0.86029 |
Target: 5'- gGGCCCCuGGGACCcGUCUUGcccaacggcccGUCCGc -3' miRNA: 3'- -CUGGGG-UCCUGG-CAGAAUuu---------CAGGCu -5' |
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27019 | 3' | -53.5 | NC_005832.1 | + | 72687 | 0.71 | 0.712612 |
Target: 5'- gGGCCCCacguccccacgGGGACCGUCUacgcGUCCa- -3' miRNA: 3'- -CUGGGG-----------UCCUGGCAGAauuuCAGGcu -5' |
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27019 | 3' | -53.5 | NC_005832.1 | + | 66917 | 0.66 | 0.932039 |
Target: 5'- gGACCCCAGc-CCGUCUaccccaaacuGUCUGAg -3' miRNA: 3'- -CUGGGGUCcuGGCAGAauuu------CAGGCU- -5' |
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27019 | 3' | -53.5 | NC_005832.1 | + | 65373 | 0.66 | 0.93413 |
Target: 5'- uACCUCaggagGGGACCGUUga-GAGUCCa- -3' miRNA: 3'- cUGGGG-----UCCUGGCAGaauUUCAGGcu -5' |
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27019 | 3' | -53.5 | NC_005832.1 | + | 56442 | 0.67 | 0.891616 |
Target: 5'- -uCCCCAGG-CCGUCaagaUAGAgggcuucucGUCCGAc -3' miRNA: 3'- cuGGGGUCCuGGCAGa---AUUU---------CAGGCU- -5' |
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27019 | 3' | -53.5 | NC_005832.1 | + | 54146 | 0.69 | 0.819738 |
Target: 5'- uGCCCgAGGACCuGUacgUGAcgGGUCCGGc -3' miRNA: 3'- cUGGGgUCCUGG-CAga-AUU--UCAGGCU- -5' |
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27019 | 3' | -53.5 | NC_005832.1 | + | 54117 | 0.68 | 0.86966 |
Target: 5'- aGCUCCAGGGCCaugaagGUCUUgccGAAG-CCGGg -3' miRNA: 3'- cUGGGGUCCUGG------CAGAA---UUUCaGGCU- -5' |
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27019 | 3' | -53.5 | NC_005832.1 | + | 54045 | 0.67 | 0.911366 |
Target: 5'- uGGCCCCaggccuccuucAGGACCccuuUCUggUGAGGUCUGGg -3' miRNA: 3'- -CUGGGG-----------UCCUGGc---AGA--AUUUCAGGCU- -5' |
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27019 | 3' | -53.5 | NC_005832.1 | + | 49631 | 0.68 | 0.877216 |
Target: 5'- cACCCUcuuuGGGACCaUCcUAGAGUCCa- -3' miRNA: 3'- cUGGGG----UCCUGGcAGaAUUUCAGGcu -5' |
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27019 | 3' | -53.5 | NC_005832.1 | + | 47250 | 0.66 | 0.938684 |
Target: 5'- uGCCCUGGGGCCaggacccuccaguGUCUgacGAGcCCGAc -3' miRNA: 3'- cUGGGGUCCUGG-------------CAGAau-UUCaGGCU- -5' |
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27019 | 3' | -53.5 | NC_005832.1 | + | 47132 | 0.67 | 0.905034 |
Target: 5'- uGGCCCCAGGGcacucgcuuuCCGUCggcGGGGUCa-- -3' miRNA: 3'- -CUGGGGUCCU----------GGCAGaa-UUUCAGgcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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