miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27019 5' -57.2 NC_005832.1 + 60311 0.68 0.705155
Target:  5'- gGGuuCCACGuCCGUgGugGCCGugaggaacUCGUCGUa -3'
miRNA:   3'- -CC--GGUGCuGGUA-CugCGGC--------AGCAGCA- -5'
27019 5' -57.2 NC_005832.1 + 51863 0.68 0.695098
Target:  5'- uGGCUcagGCGGCCuuUGACGCCGU-GUgGa -3'
miRNA:   3'- -CCGG---UGCUGGu-ACUGCGGCAgCAgCa -5'
27019 5' -57.2 NC_005832.1 + 36571 0.68 0.684988
Target:  5'- aGGCCAUGACCGaGGcCGCCaggGUCGg -3'
miRNA:   3'- -CCGGUGCUGGUaCU-GCGGcagCAGCa -5'
27019 5' -57.2 NC_005832.1 + 47790 0.69 0.664646
Target:  5'- cGGCCAgGACCuc--CGCCucgggguaGUCGUCGg -3'
miRNA:   3'- -CCGGUgCUGGuacuGCGG--------CAGCAGCa -5'
27019 5' -57.2 NC_005832.1 + 65010 0.69 0.664646
Target:  5'- cGCCGCG-CUGUGGCGCaCGUgGUCc- -3'
miRNA:   3'- cCGGUGCuGGUACUGCG-GCAgCAGca -5'
27019 5' -57.2 NC_005832.1 + 72058 0.69 0.664646
Target:  5'- aGCCGUGAUaGUGGCgGCCGUCGUgGUg -3'
miRNA:   3'- cCGGUGCUGgUACUG-CGGCAGCAgCA- -5'
27019 5' -57.2 NC_005832.1 + 2317 0.69 0.654431
Target:  5'- uGGCaauuugCugGACCAUGACGuCCGUgG-CGUc -3'
miRNA:   3'- -CCG------GugCUGGUACUGC-GGCAgCaGCA- -5'
27019 5' -57.2 NC_005832.1 + 42315 0.69 0.644199
Target:  5'- uGGCCugGACCAaGACagucuGCC-UCGUCu- -3'
miRNA:   3'- -CCGGugCUGGUaCUG-----CGGcAGCAGca -5'
27019 5' -57.2 NC_005832.1 + 91307 0.69 0.633957
Target:  5'- uGGCCACGuccagcuugGCCAUGACGgCCGaguaGUCu- -3'
miRNA:   3'- -CCGGUGC---------UGGUACUGC-GGCag--CAGca -5'
27019 5' -57.2 NC_005832.1 + 5343 0.69 0.633957
Target:  5'- gGGCCACcaGACCcucGACGgCGgggUCGUCGUg -3'
miRNA:   3'- -CCGGUG--CUGGua-CUGCgGC---AGCAGCA- -5'
27019 5' -57.2 NC_005832.1 + 90933 0.71 0.522808
Target:  5'- uGCCAUGGCCAcguUGGUGCCGaUGUCGUu -3'
miRNA:   3'- cCGGUGCUGGU---ACUGCGGCaGCAGCA- -5'
27019 5' -57.2 NC_005832.1 + 97241 0.71 0.521825
Target:  5'- uGGCCaaaaagaACGACCugGACGCCGUaGUCGc -3'
miRNA:   3'- -CCGG-------UGCUGGuaCUGCGGCAgCAGCa -5'
27019 5' -57.2 NC_005832.1 + 39475 0.71 0.513013
Target:  5'- -cCCugGGCCcUGGuCGCCGUCGUCc- -3'
miRNA:   3'- ccGGugCUGGuACU-GCGGCAGCAGca -5'
27019 5' -57.2 NC_005832.1 + 95286 0.71 0.513013
Target:  5'- aGGCCACGcUCAUGGgGuuGgacUCGUCGUa -3'
miRNA:   3'- -CCGGUGCuGGUACUgCggC---AGCAGCA- -5'
27019 5' -57.2 NC_005832.1 + 67032 0.72 0.503294
Target:  5'- uGGCgGCGGCCGUGGCgaggGCCG-CGggCGUa -3'
miRNA:   3'- -CCGgUGCUGGUACUG----CGGCaGCa-GCA- -5'
27019 5' -57.2 NC_005832.1 + 55125 0.73 0.419945
Target:  5'- cGGCCACGucuACCuccGugGCCGUCGgguUCGa -3'
miRNA:   3'- -CCGGUGC---UGGua-CugCGGCAGC---AGCa -5'
27019 5' -57.2 NC_005832.1 + 28054 0.76 0.281022
Target:  5'- uGCCACcuuGACCAccGCGUCGUCGUCGUc -3'
miRNA:   3'- cCGGUG---CUGGUacUGCGGCAGCAGCA- -5'
27019 5' -57.2 NC_005832.1 + 36085 0.79 0.205242
Target:  5'- uGGaCCACGACCGcccUGGCGCUGgCGUCGg -3'
miRNA:   3'- -CC-GGUGCUGGU---ACUGCGGCaGCAGCa -5'
27019 5' -57.2 NC_005832.1 + 48314 0.8 0.155582
Target:  5'- uGGUCACGGCCugacAUGACGCCGUC-UCGa -3'
miRNA:   3'- -CCGGUGCUGG----UACUGCGGCAGcAGCa -5'
27019 5' -57.2 NC_005832.1 + 2119 1.08 0.001962
Target:  5'- gGGCCACGACCAUGACGCCGUCGUCGUc -3'
miRNA:   3'- -CCGGUGCUGGUACUGCGGCAGCAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.