miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27019 5' -57.2 NC_005832.1 + 49052 0.68 0.71515
Target:  5'- gGGCUACGGCUccGACGUCcUCG-CGUu -3'
miRNA:   3'- -CCGGUGCUGGuaCUGCGGcAGCaGCA- -5'
27019 5' -57.2 NC_005832.1 + 51863 0.68 0.695098
Target:  5'- uGGCUcagGCGGCCuuUGACGCCGU-GUgGa -3'
miRNA:   3'- -CCGG---UGCUGGu-ACUGCGGCAgCAgCa -5'
27019 5' -57.2 NC_005832.1 + 52944 0.66 0.809678
Target:  5'- aGGCCGCaGACgGUGuccgUGCCGUCGcCc- -3'
miRNA:   3'- -CCGGUG-CUGgUACu---GCGGCAGCaGca -5'
27019 5' -57.2 NC_005832.1 + 54469 0.67 0.782612
Target:  5'- aGGCCcccaGCG-CCGcGugGuaGUCGUCGUa -3'
miRNA:   3'- -CCGG----UGCuGGUaCugCggCAGCAGCA- -5'
27019 5' -57.2 NC_005832.1 + 55125 0.73 0.419945
Target:  5'- cGGCCACGucuACCuccGugGCCGUCGgguUCGa -3'
miRNA:   3'- -CCGGUGC---UGGua-CugCGGCAGC---AGCa -5'
27019 5' -57.2 NC_005832.1 + 60311 0.68 0.705155
Target:  5'- gGGuuCCACGuCCGUgGugGCCGugaggaacUCGUCGUa -3'
miRNA:   3'- -CC--GGUGCuGGUA-CugCGGC--------AGCAGCA- -5'
27019 5' -57.2 NC_005832.1 + 65010 0.69 0.664646
Target:  5'- cGCCGCG-CUGUGGCGCaCGUgGUCc- -3'
miRNA:   3'- cCGGUGCuGGUACUGCG-GCAgCAGca -5'
27019 5' -57.2 NC_005832.1 + 67032 0.72 0.503294
Target:  5'- uGGCgGCGGCCGUGGCgaggGCCG-CGggCGUa -3'
miRNA:   3'- -CCGgUGCUGGUACUG----CGGCaGCa-GCA- -5'
27019 5' -57.2 NC_005832.1 + 72058 0.69 0.664646
Target:  5'- aGCCGUGAUaGUGGCgGCCGUCGUgGUg -3'
miRNA:   3'- cCGGUGCUGgUACUG-CGGCAGCAgCA- -5'
27019 5' -57.2 NC_005832.1 + 73012 0.67 0.782612
Target:  5'- aGGCCccaaaGGCCccGACGCgccagguagCGUCGUCGc -3'
miRNA:   3'- -CCGGug---CUGGuaCUGCG---------GCAGCAGCa -5'
27019 5' -57.2 NC_005832.1 + 76105 0.66 0.82693
Target:  5'- gGGCCACGGCCAaGAgGUgagCGUUG-CGc -3'
miRNA:   3'- -CCGGUGCUGGUaCUgCG---GCAGCaGCa -5'
27019 5' -57.2 NC_005832.1 + 77077 0.67 0.754329
Target:  5'- cGGCCgguGCGGCCGUcGCGCUGUaccUGUCu- -3'
miRNA:   3'- -CCGG---UGCUGGUAcUGCGGCA---GCAGca -5'
27019 5' -57.2 NC_005832.1 + 89638 0.67 0.782612
Target:  5'- cGGCCGgGGCCGUGGUGCCaggaGUCa- -3'
miRNA:   3'- -CCGGUgCUGGUACUGCGGcag-CAGca -5'
27019 5' -57.2 NC_005832.1 + 90933 0.71 0.522808
Target:  5'- uGCCAUGGCCAcguUGGUGCCGaUGUCGUu -3'
miRNA:   3'- cCGGUGCUGGU---ACUGCGGCaGCAGCA- -5'
27019 5' -57.2 NC_005832.1 + 91307 0.69 0.633957
Target:  5'- uGGCCACGuccagcuugGCCAUGACGgCCGaguaGUCu- -3'
miRNA:   3'- -CCGGUGC---------UGGUACUGC-GGCag--CAGca -5'
27019 5' -57.2 NC_005832.1 + 95286 0.71 0.513013
Target:  5'- aGGCCACGcUCAUGGgGuuGgacUCGUCGUa -3'
miRNA:   3'- -CCGGUGCuGGUACUgCggC---AGCAGCA- -5'
27019 5' -57.2 NC_005832.1 + 95819 0.66 0.804374
Target:  5'- uGGCCGCGGCCGcucccuUGAcCGCCGcagcgggaaagacucUCGcCGc -3'
miRNA:   3'- -CCGGUGCUGGU------ACU-GCGGC---------------AGCaGCa -5'
27019 5' -57.2 NC_005832.1 + 97241 0.71 0.521825
Target:  5'- uGGCCaaaaagaACGACCugGACGCCGUaGUCGc -3'
miRNA:   3'- -CCGG-------UGCUGGuaCUGCGGCAgCAGCa -5'
27019 5' -57.2 NC_005832.1 + 98713 0.67 0.773308
Target:  5'- aGGCaCAgGGCCGUGaACGCCGgccCGUa-- -3'
miRNA:   3'- -CCG-GUgCUGGUAC-UGCGGCa--GCAgca -5'
27019 5' -57.2 NC_005832.1 + 99626 0.67 0.782612
Target:  5'- gGGCCuuGuACCAaaaGACGCUGUCGUg-- -3'
miRNA:   3'- -CCGGugC-UGGUa--CUGCGGCAGCAgca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.