Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27019 | 5' | -57.2 | NC_005832.1 | + | 610 | 0.68 | 0.71515 |
Target: 5'- gGGCCcCGACCAgGACGCCGcCcUgGg -3' miRNA: 3'- -CCGGuGCUGGUaCUGCGGCaGcAgCa -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 1428 | 0.67 | 0.754329 |
Target: 5'- aGCCGuCGAgCAUGACGUgCGgggCGUCGc -3' miRNA: 3'- cCGGU-GCUgGUACUGCG-GCa--GCAGCa -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 2119 | 1.08 | 0.001962 |
Target: 5'- gGGCCACGACCAUGACGCCGUCGUCGUc -3' miRNA: 3'- -CCGGUGCUGGUACUGCGGCAGCAGCA- -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 2317 | 0.69 | 0.654431 |
Target: 5'- uGGCaauuugCugGACCAUGACGuCCGUgG-CGUc -3' miRNA: 3'- -CCG------GugCUGGUACUGC-GGCAgCaGCA- -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 5061 | 0.66 | 0.791781 |
Target: 5'- uGGUCAUGACCAgGAUGCCG--GUCc- -3' miRNA: 3'- -CCGGUGCUGGUaCUGCGGCagCAGca -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 5343 | 0.69 | 0.633957 |
Target: 5'- gGGCCACcaGACCcucGACGgCGgggUCGUCGUg -3' miRNA: 3'- -CCGGUG--CUGGua-CUGCgGC---AGCAGCA- -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 10868 | 0.66 | 0.835294 |
Target: 5'- cGGCCugGgACCAgGACGCCGgggacCG-Ca- -3' miRNA: 3'- -CCGGugC-UGGUaCUGCGGCa----GCaGca -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 23830 | 0.66 | 0.82693 |
Target: 5'- --aCAUGGCCGUGACugcguccauGCCGUCcUCGg -3' miRNA: 3'- ccgGUGCUGGUACUG---------CGGCAGcAGCa -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 28054 | 0.76 | 0.281022 |
Target: 5'- uGCCACcuuGACCAccGCGUCGUCGUCGUc -3' miRNA: 3'- cCGGUG---CUGGUacUGCGGCAGCAGCA- -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 31297 | 0.67 | 0.744673 |
Target: 5'- gGGCaaggGCGGCCGUGugGCC--CGUCu- -3' miRNA: 3'- -CCGg---UGCUGGUACugCGGcaGCAGca -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 31690 | 0.66 | 0.818389 |
Target: 5'- -aCCACGGCCGUGGaccaCGUCGUgGg -3' miRNA: 3'- ccGGUGCUGGUACUgcg-GCAGCAgCa -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 32281 | 0.67 | 0.773308 |
Target: 5'- cGCCGCuccuccGGCCAUGAUGuuGUCuGcCGUg -3' miRNA: 3'- cCGGUG------CUGGUACUGCggCAG-CaGCA- -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 36018 | 0.67 | 0.753368 |
Target: 5'- gGGCCugACGGCCGagcUGGUGCCGUuaaagugCGUCGa -3' miRNA: 3'- -CCGG--UGCUGGU---ACUGCGGCA-------GCAGCa -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 36085 | 0.79 | 0.205242 |
Target: 5'- uGGaCCACGACCGcccUGGCGCUGgCGUCGg -3' miRNA: 3'- -CC-GGUGCUGGU---ACUGCGGCaGCAGCa -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 36571 | 0.68 | 0.684988 |
Target: 5'- aGGCCAUGACCGaGGcCGCCaggGUCGg -3' miRNA: 3'- -CCGGUGCUGGUaCU-GCGGcagCAGCa -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 39475 | 0.71 | 0.513013 |
Target: 5'- -cCCugGGCCcUGGuCGCCGUCGUCc- -3' miRNA: 3'- ccGGugCUGGuACU-GCGGCAGCAGca -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 42315 | 0.69 | 0.644199 |
Target: 5'- uGGCCugGACCAaGACagucuGCC-UCGUCu- -3' miRNA: 3'- -CCGGugCUGGUaCUG-----CGGcAGCAGca -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 46297 | 0.68 | 0.734918 |
Target: 5'- uGGCCACGGCCAc--CGCC-UUGUCc- -3' miRNA: 3'- -CCGGUGCUGGUacuGCGGcAGCAGca -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 47790 | 0.69 | 0.664646 |
Target: 5'- cGGCCAgGACCuc--CGCCucgggguaGUCGUCGg -3' miRNA: 3'- -CCGGUgCUGGuacuGCGG--------CAGCAGCa -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 48314 | 0.8 | 0.155582 |
Target: 5'- uGGUCACGGCCugacAUGACGCCGUC-UCGa -3' miRNA: 3'- -CCGGUGCUGG----UACUGCGGCAGcAGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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