miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27019 5' -57.2 NC_005832.1 + 5061 0.66 0.791781
Target:  5'- uGGUCAUGACCAgGAUGCCG--GUCc- -3'
miRNA:   3'- -CCGGUGCUGGUaCUGCGGCagCAGca -5'
27019 5' -57.2 NC_005832.1 + 46297 0.68 0.734918
Target:  5'- uGGCCACGGCCAc--CGCC-UUGUCc- -3'
miRNA:   3'- -CCGGUGCUGGUacuGCGGcAGCAGca -5'
27019 5' -57.2 NC_005832.1 + 31297 0.67 0.744673
Target:  5'- gGGCaaggGCGGCCGUGugGCC--CGUCu- -3'
miRNA:   3'- -CCGg---UGCUGGUACugCGGcaGCAGca -5'
27019 5' -57.2 NC_005832.1 + 36018 0.67 0.753368
Target:  5'- gGGCCugACGGCCGagcUGGUGCCGUuaaagugCGUCGa -3'
miRNA:   3'- -CCGG--UGCUGGU---ACUGCGGCA-------GCAGCa -5'
27019 5' -57.2 NC_005832.1 + 1428 0.67 0.754329
Target:  5'- aGCCGuCGAgCAUGACGUgCGgggCGUCGc -3'
miRNA:   3'- cCGGU-GCUgGUACUGCG-GCa--GCAGCa -5'
27019 5' -57.2 NC_005832.1 + 77077 0.67 0.754329
Target:  5'- cGGCCgguGCGGCCGUcGCGCUGUaccUGUCu- -3'
miRNA:   3'- -CCGG---UGCUGGUAcUGCGGCA---GCAGca -5'
27019 5' -57.2 NC_005832.1 + 73012 0.67 0.782612
Target:  5'- aGGCCccaaaGGCCccGACGCgccagguagCGUCGUCGc -3'
miRNA:   3'- -CCGGug---CUGGuaCUGCG---------GCAGCAGCa -5'
27019 5' -57.2 NC_005832.1 + 89638 0.67 0.782612
Target:  5'- cGGCCGgGGCCGUGGUGCCaggaGUCa- -3'
miRNA:   3'- -CCGGUgCUGGUACUGCGGcag-CAGca -5'
27019 5' -57.2 NC_005832.1 + 99626 0.67 0.782612
Target:  5'- gGGCCuuGuACCAaaaGACGCUGUCGUg-- -3'
miRNA:   3'- -CCGGugC-UGGUa--CUGCGGCAGCAgca -5'
27019 5' -57.2 NC_005832.1 + 49052 0.68 0.71515
Target:  5'- gGGCUACGGCUccGACGUCcUCG-CGUu -3'
miRNA:   3'- -CCGGUGCUGGuaCUGCGGcAGCaGCA- -5'
27019 5' -57.2 NC_005832.1 + 60311 0.68 0.705155
Target:  5'- gGGuuCCACGuCCGUgGugGCCGugaggaacUCGUCGUa -3'
miRNA:   3'- -CC--GGUGCuGGUA-CugCGGC--------AGCAGCA- -5'
27019 5' -57.2 NC_005832.1 + 72058 0.69 0.664646
Target:  5'- aGCCGUGAUaGUGGCgGCCGUCGUgGUg -3'
miRNA:   3'- cCGGUGCUGgUACUG-CGGCAGCAgCA- -5'
27019 5' -57.2 NC_005832.1 + 36085 0.79 0.205242
Target:  5'- uGGaCCACGACCGcccUGGCGCUGgCGUCGg -3'
miRNA:   3'- -CC-GGUGCUGGU---ACUGCGGCaGCAGCa -5'
27019 5' -57.2 NC_005832.1 + 67032 0.72 0.503294
Target:  5'- uGGCgGCGGCCGUGGCgaggGCCG-CGggCGUa -3'
miRNA:   3'- -CCGgUGCUGGUACUG----CGGCaGCa-GCA- -5'
27019 5' -57.2 NC_005832.1 + 95286 0.71 0.513013
Target:  5'- aGGCCACGcUCAUGGgGuuGgacUCGUCGUa -3'
miRNA:   3'- -CCGGUGCuGGUACUgCggC---AGCAGCA- -5'
27019 5' -57.2 NC_005832.1 + 97241 0.71 0.521825
Target:  5'- uGGCCaaaaagaACGACCugGACGCCGUaGUCGc -3'
miRNA:   3'- -CCGG-------UGCUGGuaCUGCGGCAgCAGCa -5'
27019 5' -57.2 NC_005832.1 + 90933 0.71 0.522808
Target:  5'- uGCCAUGGCCAcguUGGUGCCGaUGUCGUu -3'
miRNA:   3'- cCGGUGCUGGU---ACUGCGGCaGCAGCA- -5'
27019 5' -57.2 NC_005832.1 + 91307 0.69 0.633957
Target:  5'- uGGCCACGuccagcuugGCCAUGACGgCCGaguaGUCu- -3'
miRNA:   3'- -CCGGUGC---------UGGUACUGC-GGCag--CAGca -5'
27019 5' -57.2 NC_005832.1 + 47790 0.69 0.664646
Target:  5'- cGGCCAgGACCuc--CGCCucgggguaGUCGUCGg -3'
miRNA:   3'- -CCGGUgCUGGuacuGCGG--------CAGCAGCa -5'
27019 5' -57.2 NC_005832.1 + 65010 0.69 0.664646
Target:  5'- cGCCGCG-CUGUGGCGCaCGUgGUCc- -3'
miRNA:   3'- cCGGUGCuGGUACUGCG-GCAgCAGca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.