Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27019 | 5' | -57.2 | NC_005832.1 | + | 2119 | 1.08 | 0.001962 |
Target: 5'- gGGCCACGACCAUGACGCCGUCGUCGUc -3' miRNA: 3'- -CCGGUGCUGGUACUGCGGCAGCAGCA- -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 32281 | 0.67 | 0.773308 |
Target: 5'- cGCCGCuccuccGGCCAUGAUGuuGUCuGcCGUg -3' miRNA: 3'- cCGGUG------CUGGUACUGCggCAG-CaGCA- -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 51863 | 0.68 | 0.695098 |
Target: 5'- uGGCUcagGCGGCCuuUGACGCCGU-GUgGa -3' miRNA: 3'- -CCGG---UGCUGGu-ACUGCGGCAgCAgCa -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 36571 | 0.68 | 0.684988 |
Target: 5'- aGGCCAUGACCGaGGcCGCCaggGUCGg -3' miRNA: 3'- -CCGGUGCUGGUaCU-GCGGcagCAGCa -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 42315 | 0.69 | 0.644199 |
Target: 5'- uGGCCugGACCAaGACagucuGCC-UCGUCu- -3' miRNA: 3'- -CCGGugCUGGUaCUG-----CGGcAGCAGca -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 5343 | 0.69 | 0.633957 |
Target: 5'- gGGCCACcaGACCcucGACGgCGgggUCGUCGUg -3' miRNA: 3'- -CCGGUG--CUGGua-CUGCgGC---AGCAGCA- -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 76105 | 0.66 | 0.82693 |
Target: 5'- gGGCCACGGCCAaGAgGUgagCGUUG-CGc -3' miRNA: 3'- -CCGGUGCUGGUaCUgCG---GCAGCaGCa -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 98713 | 0.67 | 0.773308 |
Target: 5'- aGGCaCAgGGCCGUGaACGCCGgccCGUa-- -3' miRNA: 3'- -CCG-GUgCUGGUAC-UGCGGCa--GCAgca -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 2317 | 0.69 | 0.654431 |
Target: 5'- uGGCaauuugCugGACCAUGACGuCCGUgG-CGUc -3' miRNA: 3'- -CCG------GugCUGGUACUGC-GGCAgCaGCA- -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 39475 | 0.71 | 0.513013 |
Target: 5'- -cCCugGGCCcUGGuCGCCGUCGUCc- -3' miRNA: 3'- ccGGugCUGGuACU-GCGGCAGCAGca -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 28054 | 0.76 | 0.281022 |
Target: 5'- uGCCACcuuGACCAccGCGUCGUCGUCGUc -3' miRNA: 3'- cCGGUG---CUGGUacUGCGGCAGCAGCA- -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 23830 | 0.66 | 0.82693 |
Target: 5'- --aCAUGGCCGUGACugcguccauGCCGUCcUCGg -3' miRNA: 3'- ccgGUGCUGGUACUG---------CGGCAGcAGCa -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 55125 | 0.73 | 0.419945 |
Target: 5'- cGGCCACGucuACCuccGugGCCGUCGgguUCGa -3' miRNA: 3'- -CCGGUGC---UGGua-CugCGGCAGC---AGCa -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 610 | 0.68 | 0.71515 |
Target: 5'- gGGCCcCGACCAgGACGCCGcCcUgGg -3' miRNA: 3'- -CCGGuGCUGGUaCUGCGGCaGcAgCa -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 10868 | 0.66 | 0.835294 |
Target: 5'- cGGCCugGgACCAgGACGCCGgggacCG-Ca- -3' miRNA: 3'- -CCGGugC-UGGUaCUGCGGCa----GCaGca -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 54469 | 0.67 | 0.782612 |
Target: 5'- aGGCCcccaGCG-CCGcGugGuaGUCGUCGUa -3' miRNA: 3'- -CCGG----UGCuGGUaCugCggCAGCAGCA- -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 36018 | 0.67 | 0.753368 |
Target: 5'- gGGCCugACGGCCGagcUGGUGCCGUuaaagugCGUCGa -3' miRNA: 3'- -CCGG--UGCUGGU---ACUGCGGCA-------GCAGCa -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 31297 | 0.67 | 0.744673 |
Target: 5'- gGGCaaggGCGGCCGUGugGCC--CGUCu- -3' miRNA: 3'- -CCGg---UGCUGGUACugCGGcaGCAGca -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 46297 | 0.68 | 0.734918 |
Target: 5'- uGGCCACGGCCAc--CGCC-UUGUCc- -3' miRNA: 3'- -CCGGUGCUGGUacuGCGGcAGCAGca -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 49052 | 0.68 | 0.71515 |
Target: 5'- gGGCUACGGCUccGACGUCcUCG-CGUu -3' miRNA: 3'- -CCGGUGCUGGuaCUGCGGcAGCaGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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