miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27020 5' -49.5 NC_005832.1 + 42529 0.66 0.994373
Target:  5'- --cUCGGGgGCGGACGCg--UGCUGCu -3'
miRNA:   3'- gacAGUUUgUGCCUGUGagaGUGACG- -5'
27020 5' -49.5 NC_005832.1 + 74485 0.66 0.99345
Target:  5'- cCUGUCAAACACGGcCAUagUCGa--- -3'
miRNA:   3'- -GACAGUUUGUGCCuGUGagAGUgacg -5'
27020 5' -49.5 NC_005832.1 + 65060 0.66 0.99241
Target:  5'- -cGUCGuACuCGGACACugUCUCGCaGUu -3'
miRNA:   3'- gaCAGUuUGuGCCUGUG--AGAGUGaCG- -5'
27020 5' -49.5 NC_005832.1 + 96973 0.66 0.991243
Target:  5'- gCUGUCAGACA-GGcCAUcuaUCUCuGCUGUc -3'
miRNA:   3'- -GACAGUUUGUgCCuGUG---AGAG-UGACG- -5'
27020 5' -49.5 NC_005832.1 + 35215 0.66 0.989939
Target:  5'- -gGUCGAcgacucUugGGuAUACUCUgGCUGCg -3'
miRNA:   3'- gaCAGUUu-----GugCC-UGUGAGAgUGACG- -5'
27020 5' -49.5 NC_005832.1 + 56271 0.67 0.986878
Target:  5'- -cGUCAAGCuccaGGAgaCGCUCUCGuacuUUGCa -3'
miRNA:   3'- gaCAGUUUGug--CCU--GUGAGAGU----GACG- -5'
27020 5' -49.5 NC_005832.1 + 48682 0.67 0.985101
Target:  5'- -gGUCAGACgcuguGCGGAguCUUUUACgGCa -3'
miRNA:   3'- gaCAGUUUG-----UGCCUguGAGAGUGaCG- -5'
27020 5' -49.5 NC_005832.1 + 95589 0.67 0.985101
Target:  5'- aCUGUCucauuGC-CGGAgaCGCUCUC-CUGUu -3'
miRNA:   3'- -GACAGuu---UGuGCCU--GUGAGAGuGACG- -5'
27020 5' -49.5 NC_005832.1 + 71440 0.67 0.985101
Target:  5'- gCUGcUCAAAUuCGGcaaaaACGCUCUCugcCUGCu -3'
miRNA:   3'- -GAC-AGUUUGuGCC-----UGUGAGAGu--GACG- -5'
27020 5' -49.5 NC_005832.1 + 78683 0.67 0.985101
Target:  5'- cCUGUCuccAAACuCGGGCACagUCAC-GCu -3'
miRNA:   3'- -GACAG---UUUGuGCCUGUGagAGUGaCG- -5'
27020 5' -49.5 NC_005832.1 + 66777 0.67 0.983146
Target:  5'- cCUGaCAcAGCACGGACGCcacgUUC-CUGCc -3'
miRNA:   3'- -GACaGU-UUGUGCCUGUGa---GAGuGACG- -5'
27020 5' -49.5 NC_005832.1 + 13714 0.67 0.981004
Target:  5'- -cGUCAacccaGACACGGGCagggcgcuggaGCUCg-ACUGCu -3'
miRNA:   3'- gaCAGU-----UUGUGCCUG-----------UGAGagUGACG- -5'
27020 5' -49.5 NC_005832.1 + 42382 0.68 0.978664
Target:  5'- -aGUCc--CACGGGCACg--UACUGCu -3'
miRNA:   3'- gaCAGuuuGUGCCUGUGagaGUGACG- -5'
27020 5' -49.5 NC_005832.1 + 97714 0.68 0.972189
Target:  5'- gUGUCGGACAUGaccaaggccuacgaGACcgucaagGCUUUCGCUGCc -3'
miRNA:   3'- gACAGUUUGUGC--------------CUG-------UGAGAGUGACG- -5'
27020 5' -49.5 NC_005832.1 + 10505 0.69 0.963692
Target:  5'- aUGUCAgacAGCAgGGACAggC-CGCUGCc -3'
miRNA:   3'- gACAGU---UUGUgCCUGUgaGaGUGACG- -5'
27020 5' -49.5 NC_005832.1 + 96739 0.69 0.959987
Target:  5'- -cGUCuuuGAgACGGcAgACUCUCACgGCg -3'
miRNA:   3'- gaCAGu--UUgUGCC-UgUGAGAGUGaCG- -5'
27020 5' -49.5 NC_005832.1 + 105574 0.69 0.951814
Target:  5'- uUGUCGGAUcUGaGAUGCUaaCUCGCUGCa -3'
miRNA:   3'- gACAGUUUGuGC-CUGUGA--GAGUGACG- -5'
27020 5' -49.5 NC_005832.1 + 97771 0.69 0.947335
Target:  5'- -cGUCGAccgcCGCGGACACcuUCUCcagcCUGCu -3'
miRNA:   3'- gaCAGUUu---GUGCCUGUG--AGAGu---GACG- -5'
27020 5' -49.5 NC_005832.1 + 65473 0.69 0.947335
Target:  5'- -aGUCGGGCACGucC-CUCUCGucCUGCa -3'
miRNA:   3'- gaCAGUUUGUGCcuGuGAGAGU--GACG- -5'
27020 5' -49.5 NC_005832.1 + 12862 0.7 0.926159
Target:  5'- -gGUCu-ACACGGAC-CUCcacggcgaaacccUCACUGCc -3'
miRNA:   3'- gaCAGuuUGUGCCUGuGAG-------------AGUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.