miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27021 5' -51.4 NC_005832.1 + 103831 0.66 0.978298
Target:  5'- -gGAGGCCuGGUUAgucCCCGGGGu--- -3'
miRNA:   3'- cgCUCCGG-CUAGUau-GGGUCCUuuuc -5'
27021 5' -51.4 NC_005832.1 + 79292 0.66 0.978298
Target:  5'- aGgGAGGCCGcUCc-ACCCAGGc---- -3'
miRNA:   3'- -CgCUCCGGCuAGuaUGGGUCCuuuuc -5'
27021 5' -51.4 NC_005832.1 + 39470 0.66 0.975757
Target:  5'- gGCccuGGUCGccGUCGUcCCCGGGggGGGu -3'
miRNA:   3'- -CGcu-CCGGC--UAGUAuGGGUCCuuUUC- -5'
27021 5' -51.4 NC_005832.1 + 39359 0.66 0.975757
Target:  5'- -aGGGGCCcaggg-GCCCAGGGGAGc -3'
miRNA:   3'- cgCUCCGGcuaguaUGGGUCCUUUUc -5'
27021 5' -51.4 NC_005832.1 + 44330 0.66 0.973005
Target:  5'- gGUGAGGCUGAggaccCCCAGGcacccAGAGa -3'
miRNA:   3'- -CGCUCCGGCUaguauGGGUCCu----UUUC- -5'
27021 5' -51.4 NC_005832.1 + 52802 0.66 0.966837
Target:  5'- cCGGGGCCaugC-UGCCCAGGGGc-- -3'
miRNA:   3'- cGCUCCGGcuaGuAUGGGUCCUUuuc -5'
27021 5' -51.4 NC_005832.1 + 19730 0.66 0.966837
Target:  5'- -gGGGGaCCG-UCAgGCCCAGGGGc-- -3'
miRNA:   3'- cgCUCC-GGCuAGUaUGGGUCCUUuuc -5'
27021 5' -51.4 NC_005832.1 + 102366 0.67 0.963405
Target:  5'- cCGAGG-CGGUCGUAgCCAuGGAGGc- -3'
miRNA:   3'- cGCUCCgGCUAGUAUgGGU-CCUUUuc -5'
27021 5' -51.4 NC_005832.1 + 98834 0.67 0.955816
Target:  5'- gGCGgaAGGCaccaGAUCAUGCCCGGc----- -3'
miRNA:   3'- -CGC--UCCGg---CUAGUAUGGGUCcuuuuc -5'
27021 5' -51.4 NC_005832.1 + 97634 0.67 0.955816
Target:  5'- aGCuGGGuuGc-CAUGCCCAGGAAccGg -3'
miRNA:   3'- -CGcUCCggCuaGUAUGGGUCCUUuuC- -5'
27021 5' -51.4 NC_005832.1 + 94781 0.67 0.951647
Target:  5'- cGCGAgGGCCGA-CGcgGCCUgaucGGGAGAAc -3'
miRNA:   3'- -CGCU-CCGGCUaGUa-UGGG----UCCUUUUc -5'
27021 5' -51.4 NC_005832.1 + 41807 0.67 0.945844
Target:  5'- cGUGAGGUaCGAgccccCGUGCCCagacggcaaacccuGGGAGAAGc -3'
miRNA:   3'- -CGCUCCG-GCUa----GUAUGGG--------------UCCUUUUC- -5'
27021 5' -51.4 NC_005832.1 + 42508 0.68 0.942538
Target:  5'- -aGAcGCCGAUCGgGCCUcuguGGAAGAGg -3'
miRNA:   3'- cgCUcCGGCUAGUaUGGGu---CCUUUUC- -5'
27021 5' -51.4 NC_005832.1 + 49588 0.68 0.942538
Target:  5'- -gGAGGUC---CAUGCCCGGGAAGc- -3'
miRNA:   3'- cgCUCCGGcuaGUAUGGGUCCUUUuc -5'
27021 5' -51.4 NC_005832.1 + 11555 0.68 0.942538
Target:  5'- aGCGuGGCCGAaaggGCCaAGGAAAAa -3'
miRNA:   3'- -CGCuCCGGCUaguaUGGgUCCUUUUc -5'
27021 5' -51.4 NC_005832.1 + 11308 0.68 0.926907
Target:  5'- cGCgGAGGCC-AUCAUGgCCAGGu---- -3'
miRNA:   3'- -CG-CUCCGGcUAGUAUgGGUCCuuuuc -5'
27021 5' -51.4 NC_005832.1 + 23883 0.68 0.926907
Target:  5'- uGCGAGGuuGGUCGUGaccuCCCAGu----- -3'
miRNA:   3'- -CGCUCCggCUAGUAU----GGGUCcuuuuc -5'
27021 5' -51.4 NC_005832.1 + 29635 0.68 0.921165
Target:  5'- aGgGAGGCU----AUAUCCAGGGGAGGg -3'
miRNA:   3'- -CgCUCCGGcuagUAUGGGUCCUUUUC- -5'
27021 5' -51.4 NC_005832.1 + 18443 0.68 0.920576
Target:  5'- aGCGGGGCCaGAUUuucUGCCCAcauucuuGGGAGGc -3'
miRNA:   3'- -CGCUCCGG-CUAGu--AUGGGU-------CCUUUUc -5'
27021 5' -51.4 NC_005832.1 + 84141 0.69 0.908888
Target:  5'- aCGGGaGCgGAcagCAUcgcGCCCAGGGAAGGu -3'
miRNA:   3'- cGCUC-CGgCUa--GUA---UGGGUCCUUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.