miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27021 5' -51.4 NC_005832.1 + 51736 0.69 0.895563
Target:  5'- gGCGucaaAGGCCGccugagcCAUACCCAGGGc--- -3'
miRNA:   3'- -CGC----UCCGGCua-----GUAUGGGUCCUuuuc -5'
27021 5' -51.4 NC_005832.1 + 81137 0.7 0.881217
Target:  5'- aGgGAGGCCGAggCGUACUCuuGGAccGGg -3'
miRNA:   3'- -CgCUCCGGCUa-GUAUGGGu-CCUuuUC- -5'
27021 5' -51.4 NC_005832.1 + 44403 0.7 0.873672
Target:  5'- uGCGGaGCCG-UCcugACCCAGGAGGAc -3'
miRNA:   3'- -CGCUcCGGCuAGua-UGGGUCCUUUUc -5'
27021 5' -51.4 NC_005832.1 + 47933 0.7 0.873672
Target:  5'- uCGAGGCCGA-CGacUACCCcgAGGcgGAGg -3'
miRNA:   3'- cGCUCCGGCUaGU--AUGGG--UCCuuUUC- -5'
27021 5' -51.4 NC_005832.1 + 78785 0.7 0.857868
Target:  5'- -gGGGGCUGcaGUgGUGCCCGGGGAc-- -3'
miRNA:   3'- cgCUCCGGC--UAgUAUGGGUCCUUuuc -5'
27021 5' -51.4 NC_005832.1 + 48201 0.7 0.849623
Target:  5'- uGCG-GGUgGAUCAgGCUgGGGAAGGGa -3'
miRNA:   3'- -CGCuCCGgCUAGUaUGGgUCCUUUUC- -5'
27021 5' -51.4 NC_005832.1 + 21081 0.71 0.832482
Target:  5'- -gGAGGCUGGUgAUugCCGGGGc--- -3'
miRNA:   3'- cgCUCCGGCUAgUAugGGUCCUuuuc -5'
27021 5' -51.4 NC_005832.1 + 36213 0.71 0.823604
Target:  5'- aGCGccAGGgCGGUCGUgguccaGCCCAGGAGc-- -3'
miRNA:   3'- -CGC--UCCgGCUAGUA------UGGGUCCUUuuc -5'
27021 5' -51.4 NC_005832.1 + 93604 0.71 0.795845
Target:  5'- aGCGGGaG-CGAUCAUGCUCAGGGc--- -3'
miRNA:   3'- -CGCUC-CgGCUAGUAUGGGUCCUuuuc -5'
27021 5' -51.4 NC_005832.1 + 47704 0.72 0.776502
Target:  5'- cGCGAGGCCG-----GCCaAGGAGAGGa -3'
miRNA:   3'- -CGCUCCGGCuaguaUGGgUCCUUUUC- -5'
27021 5' -51.4 NC_005832.1 + 94031 0.72 0.756584
Target:  5'- -aGGGGCCGA-CAUG-CCGGGAAAGa -3'
miRNA:   3'- cgCUCCGGCUaGUAUgGGUCCUUUUc -5'
27021 5' -51.4 NC_005832.1 + 5762 0.74 0.651386
Target:  5'- aCGAGGguCUGGUCAcccUGCCCAGGGGAGa -3'
miRNA:   3'- cGCUCC--GGCUAGU---AUGGGUCCUUUUc -5'
27021 5' -51.4 NC_005832.1 + 5324 0.75 0.619027
Target:  5'- gGCGGGGUCG-UCGUGCuCCAGGGc--- -3'
miRNA:   3'- -CGCUCCGGCuAGUAUG-GGUCCUuuuc -5'
27021 5' -51.4 NC_005832.1 + 5055 0.75 0.608251
Target:  5'- -gGAGGCUGGUCAUGaCCAGGAu--- -3'
miRNA:   3'- cgCUCCGGCUAGUAUgGGUCCUuuuc -5'
27021 5' -51.4 NC_005832.1 + 103495 0.77 0.523426
Target:  5'- aCGGGGCUGA-CGUACCCcuuGGAAGGGu -3'
miRNA:   3'- cGCUCCGGCUaGUAUGGGu--CCUUUUC- -5'
27021 5' -51.4 NC_005832.1 + 3320 1.1 0.004492
Target:  5'- gGCGAGGCCGAUCAUACCCAGGAAAAGc -3'
miRNA:   3'- -CGCUCCGGCUAGUAUGGGUCCUUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.