miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27024 5' -57.8 NC_005832.1 + 94366 0.68 0.681335
Target:  5'- aGGG-GaGACGGGuGGACugcguGAGGACc-- -3'
miRNA:   3'- -CCCaC-CUGCCCuCCUGu----CUCCUGucu -5'
27024 5' -57.8 NC_005832.1 + 92879 0.67 0.691476
Target:  5'- uGG-GGAagcuccUGGGAGGACAGAuGGACu-- -3'
miRNA:   3'- cCCaCCU------GCCCUCCUGUCU-CCUGucu -5'
27024 5' -57.8 NC_005832.1 + 92457 0.7 0.519053
Target:  5'- uGGUGGACGacGAGGACGacGAGGAcCAGu -3'
miRNA:   3'- cCCACCUGCc-CUCCUGU--CUCCU-GUCu -5'
27024 5' -57.8 NC_005832.1 + 92137 0.67 0.73145
Target:  5'- aGGUGGGagaguuuuGGAGGGCGGuggcagacAGGAUAGAg -3'
miRNA:   3'- cCCACCUgc------CCUCCUGUC--------UCCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 90553 0.75 0.284197
Target:  5'- gGGGUgccugagGGACGGGAGGcCcGAGGACAa- -3'
miRNA:   3'- -CCCA-------CCUGCCCUCCuGuCUCCUGUcu -5'
27024 5' -57.8 NC_005832.1 + 87953 0.74 0.350097
Target:  5'- -aGUGGAcCGGGAGGACcGAGGA-AGAg -3'
miRNA:   3'- ccCACCU-GCCCUCCUGuCUCCUgUCU- -5'
27024 5' -57.8 NC_005832.1 + 87485 0.66 0.770042
Target:  5'- aGGaUGGACGcGAGGACc-AGGGCAGc -3'
miRNA:   3'- cCC-ACCUGCcCUCCUGucUCCUGUCu -5'
27024 5' -57.8 NC_005832.1 + 80802 0.66 0.783112
Target:  5'- gGGGUccucguaGACGGGAGGACcgccgucggaccaagAGGGGuuGGGg -3'
miRNA:   3'- -CCCAc------CUGCCCUCCUG---------------UCUCCugUCU- -5'
27024 5' -57.8 NC_005832.1 + 79972 0.7 0.558852
Target:  5'- aGGUGGAggaGGGAGGugGG-GGACc-- -3'
miRNA:   3'- cCCACCUg--CCCUCCugUCuCCUGucu -5'
27024 5' -57.8 NC_005832.1 + 78927 0.66 0.788634
Target:  5'- uGGUGGAgaugGGGAGGGuugucagcguCAGGcuGGACGGGa -3'
miRNA:   3'- cCCACCUg---CCCUCCU----------GUCU--CCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 75085 0.67 0.711598
Target:  5'- aGGUGGcugucugucAUGGGAGGA-GGAGuGGCGGGc -3'
miRNA:   3'- cCCACC---------UGCCCUCCUgUCUC-CUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 67466 0.68 0.640453
Target:  5'- cGGUGGcgggucUGGGGGGAgCGgucuuGAGGACGGAa -3'
miRNA:   3'- cCCACCu-----GCCCUCCU-GU-----CUCCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 66868 0.67 0.740275
Target:  5'- aGGG-GGuCGGGAacgacgaGGAUAGuguccaGGGACAGGu -3'
miRNA:   3'- -CCCaCCuGCCCU-------CCUGUC------UCCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 66179 0.68 0.66094
Target:  5'- gGGGUGGGaGGGAcagcuaGACAGGuGGAUGGAc -3'
miRNA:   3'- -CCCACCUgCCCUc-----CUGUCU-CCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 66112 0.72 0.431517
Target:  5'- cGGGaGGACGGGaAGGgaGCAGgaccaccgaucccaGGGACAGGu -3'
miRNA:   3'- -CCCaCCUGCCC-UCC--UGUC--------------UCCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 59906 0.68 0.640453
Target:  5'- --cUGGAUGaGGAGGcucUGGAGGGCAGAg -3'
miRNA:   3'- cccACCUGC-CCUCCu--GUCUCCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 56021 0.69 0.599461
Target:  5'- aGGGgaacaaucucUGGucaucagaACGGGAGGACAGAcuacugggGGACGGu -3'
miRNA:   3'- -CCC----------ACC--------UGCCCUCCUGUCU--------CCUGUCu -5'
27024 5' -57.8 NC_005832.1 + 54356 0.7 0.568944
Target:  5'- uGG-GGGCcuuuuucggcgGGGAGGACAGcacgguGGACAGGg -3'
miRNA:   3'- cCCaCCUG-----------CCCUCCUGUCu-----CCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 51035 0.66 0.760556
Target:  5'- aGGUGGgaccgACGGGcAGGugGGAccGACAGGc -3'
miRNA:   3'- cCCACC-----UGCCC-UCCugUCUc-CUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 43829 0.7 0.525943
Target:  5'- cGGUGGuggccaucaugacgGCGGGAGGcuucaaccaAGAGGACAGc -3'
miRNA:   3'- cCCACC--------------UGCCCUCCug-------UCUCCUGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.