miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27024 5' -57.8 NC_005832.1 + 115 0.69 0.599461
Target:  5'- uGGGgGGAgUGGGGGGAUcugguuugGGAGGAguGGg -3'
miRNA:   3'- -CCCaCCU-GCCCUCCUG--------UCUCCUguCU- -5'
27024 5' -57.8 NC_005832.1 + 166 0.75 0.278241
Target:  5'- aGGaGUGGGuuUGGGAGGcgGCGGAGGAgGGAc -3'
miRNA:   3'- -CC-CACCU--GCCCUCC--UGUCUCCUgUCU- -5'
27024 5' -57.8 NC_005832.1 + 1949 0.68 0.681335
Target:  5'- ---cGGACaGGAGG-CAGGuGGACAGGg -3'
miRNA:   3'- cccaCCUGcCCUCCuGUCU-CCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 2663 0.67 0.701567
Target:  5'- gGGGUGGGUGuGGaAGGACAcGAGGccguCGGGg -3'
miRNA:   3'- -CCCACCUGC-CC-UCCUGU-CUCCu---GUCU- -5'
27024 5' -57.8 NC_005832.1 + 5002 0.7 0.548811
Target:  5'- -cGUGGACaGGGuccuGGGCAGGGGAaAGGg -3'
miRNA:   3'- ccCACCUG-CCCu---CCUGUCUCCUgUCU- -5'
27024 5' -57.8 NC_005832.1 + 6219 0.68 0.681335
Target:  5'- -uGUGGACuGuGGAGGAgGGugcAGGAUAGAg -3'
miRNA:   3'- ccCACCUG-C-CCUCCUgUC---UCCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 6225 0.67 0.689451
Target:  5'- aGGcaGGccgcgagcuccuCGGGAGGGCAGGGGaugGCAGAg -3'
miRNA:   3'- -CCcaCCu-----------GCCCUCCUGUCUCC---UGUCU- -5'
27024 5' -57.8 NC_005832.1 + 6321 1.11 0.001072
Target:  5'- aGGGUGGACGGGAGGACAGAGGACAGAa -3'
miRNA:   3'- -CCCACCUGCCCUCCUGUCUCCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 6511 0.75 0.30267
Target:  5'- gGGGUGucuguggcccuguGCGGGgccaGGGACAGGGGGCAGGc -3'
miRNA:   3'- -CCCACc------------UGCCC----UCCUGUCUCCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 7903 0.67 0.701567
Target:  5'- uGGcaGACuGGGAGaGGguGAGGACAGAc -3'
miRNA:   3'- cCCacCUG-CCCUC-CUguCUCCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 9307 0.69 0.590275
Target:  5'- cGGUGGGCaGGAGGugcguggacugggauCAGAGGACc-- -3'
miRNA:   3'- cCCACCUGcCCUCCu--------------GUCUCCUGucu -5'
27024 5' -57.8 NC_005832.1 + 9898 0.7 0.538827
Target:  5'- uGGGgGGACGGcGcuguacucAGGGCGGAGGgagGCAGGc -3'
miRNA:   3'- -CCCaCCUGCC-C--------UCCUGUCUCC---UGUCU- -5'
27024 5' -57.8 NC_005832.1 + 10791 0.66 0.750956
Target:  5'- aGGaGGugGGGAucGGcuGCGGAGGcCAGGa -3'
miRNA:   3'- cCCaCCugCCCU--CC--UGUCUCCuGUCU- -5'
27024 5' -57.8 NC_005832.1 + 12013 0.68 0.670134
Target:  5'- aGGcUGGGCcGGAGGAgucuugaCGGGGGugGGAu -3'
miRNA:   3'- cCC-ACCUGcCCUCCU-------GUCUCCugUCU- -5'
27024 5' -57.8 NC_005832.1 + 12538 0.68 0.681335
Target:  5'- -cGUGGACGGGGcGGCGGcGGAUGGu -3'
miRNA:   3'- ccCACCUGCCCUcCUGUCuCCUGUCu -5'
27024 5' -57.8 NC_005832.1 + 21133 0.7 0.519053
Target:  5'- aGGccGGCGGGAgcugGGAUccuGGAGGACAGAg -3'
miRNA:   3'- cCCacCUGCCCU----CCUG---UCUCCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 28069 0.66 0.779404
Target:  5'- aGGGUGGugGGGAccaaGaGGCccuuugccguGGAGGuuGCGGGc -3'
miRNA:   3'- -CCCACCugCCCU----C-CUG----------UCUCC--UGUCU- -5'
27024 5' -57.8 NC_005832.1 + 36057 0.69 0.599461
Target:  5'- gGGGUGGGcCGGGuGGACGcuccuGGGCuGGAc -3'
miRNA:   3'- -CCCACCU-GCCCuCCUGUcu---CCUG-UCU- -5'
27024 5' -57.8 NC_005832.1 + 37979 0.69 0.630195
Target:  5'- ------gUGGGAGGACAGAGGGuCGGAu -3'
miRNA:   3'- cccaccuGCCCUCCUGUCUCCU-GUCU- -5'
27024 5' -57.8 NC_005832.1 + 39263 0.73 0.407747
Target:  5'- gGGGaUGGGCGGGAucuGGCGGAGGcuCGGGa -3'
miRNA:   3'- -CCC-ACCUGCCCUc--CUGUCUCCu-GUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.