Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27024 | 5' | -57.8 | NC_005832.1 | + | 39837 | 0.66 | 0.792286 |
Target: 5'- aGGGUucGGACGGagacgugggagguauGGGGcCAGAGGGCccaaagGGAg -3' miRNA: 3'- -CCCA--CCUGCC---------------CUCCuGUCUCCUG------UCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 42628 | 0.72 | 0.425276 |
Target: 5'- gGGGUGGAUGGucaaGAGGAUGGcGGACGc- -3' miRNA: 3'- -CCCACCUGCC----CUCCUGUCuCCUGUcu -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 43829 | 0.7 | 0.525943 |
Target: 5'- cGGUGGuggccaucaugacgGCGGGAGGcuucaaccaAGAGGACAGc -3' miRNA: 3'- cCCACC--------------UGCCCUCCug-------UCUCCUGUCu -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 51035 | 0.66 | 0.760556 |
Target: 5'- aGGUGGgaccgACGGGcAGGugGGAccGACAGGc -3' miRNA: 3'- cCCACC-----UGCCC-UCCugUCUc-CUGUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 54356 | 0.7 | 0.568944 |
Target: 5'- uGG-GGGCcuuuuucggcgGGGAGGACAGcacgguGGACAGGg -3' miRNA: 3'- cCCaCCUG-----------CCCUCCUGUCu-----CCUGUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 56021 | 0.69 | 0.599461 |
Target: 5'- aGGGgaacaaucucUGGucaucagaACGGGAGGACAGAcuacugggGGACGGu -3' miRNA: 3'- -CCC----------ACC--------UGCCCUCCUGUCU--------CCUGUCu -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 59906 | 0.68 | 0.640453 |
Target: 5'- --cUGGAUGaGGAGGcucUGGAGGGCAGAg -3' miRNA: 3'- cccACCUGC-CCUCCu--GUCUCCUGUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 66112 | 0.72 | 0.431517 |
Target: 5'- cGGGaGGACGGGaAGGgaGCAGgaccaccgaucccaGGGACAGGu -3' miRNA: 3'- -CCCaCCUGCCC-UCC--UGUC--------------UCCUGUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 66179 | 0.68 | 0.66094 |
Target: 5'- gGGGUGGGaGGGAcagcuaGACAGGuGGAUGGAc -3' miRNA: 3'- -CCCACCUgCCCUc-----CUGUCU-CCUGUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 66868 | 0.67 | 0.740275 |
Target: 5'- aGGG-GGuCGGGAacgacgaGGAUAGuguccaGGGACAGGu -3' miRNA: 3'- -CCCaCCuGCCCU-------CCUGUC------UCCUGUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 67466 | 0.68 | 0.640453 |
Target: 5'- cGGUGGcgggucUGGGGGGAgCGgucuuGAGGACGGAa -3' miRNA: 3'- cCCACCu-----GCCCUCCU-GU-----CUCCUGUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 75085 | 0.67 | 0.711598 |
Target: 5'- aGGUGGcugucugucAUGGGAGGA-GGAGuGGCGGGc -3' miRNA: 3'- cCCACC---------UGCCCUCCUgUCUC-CUGUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 78927 | 0.66 | 0.788634 |
Target: 5'- uGGUGGAgaugGGGAGGGuugucagcguCAGGcuGGACGGGa -3' miRNA: 3'- cCCACCUg---CCCUCCU----------GUCU--CCUGUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 79972 | 0.7 | 0.558852 |
Target: 5'- aGGUGGAggaGGGAGGugGG-GGACc-- -3' miRNA: 3'- cCCACCUg--CCCUCCugUCuCCUGucu -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 80802 | 0.66 | 0.783112 |
Target: 5'- gGGGUccucguaGACGGGAGGACcgccgucggaccaagAGGGGuuGGGg -3' miRNA: 3'- -CCCAc------CUGCCCUCCUG---------------UCUCCugUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 87485 | 0.66 | 0.770042 |
Target: 5'- aGGaUGGACGcGAGGACc-AGGGCAGc -3' miRNA: 3'- cCC-ACCUGCcCUCCUGucUCCUGUCu -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 87953 | 0.74 | 0.350097 |
Target: 5'- -aGUGGAcCGGGAGGACcGAGGA-AGAg -3' miRNA: 3'- ccCACCU-GCCCUCCUGuCUCCUgUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 90553 | 0.75 | 0.284197 |
Target: 5'- gGGGUgccugagGGACGGGAGGcCcGAGGACAa- -3' miRNA: 3'- -CCCA-------CCUGCCCUCCuGuCUCCUGUcu -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 92137 | 0.67 | 0.73145 |
Target: 5'- aGGUGGGagaguuuuGGAGGGCGGuggcagacAGGAUAGAg -3' miRNA: 3'- cCCACCUgc------CCUCCUGUC--------UCCUGUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 92457 | 0.7 | 0.519053 |
Target: 5'- uGGUGGACGacGAGGACGacGAGGAcCAGu -3' miRNA: 3'- cCCACCUGCc-CUCCUGU--CUCCU-GUCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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