miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27024 5' -57.8 NC_005832.1 + 5002 0.7 0.548811
Target:  5'- -cGUGGACaGGGuccuGGGCAGGGGAaAGGg -3'
miRNA:   3'- ccCACCUG-CCCu---CCUGUCUCCUgUCU- -5'
27024 5' -57.8 NC_005832.1 + 79972 0.7 0.558852
Target:  5'- aGGUGGAggaGGGAGGugGG-GGACc-- -3'
miRNA:   3'- cCCACCUg--CCCUCCugUCuCCUGucu -5'
27024 5' -57.8 NC_005832.1 + 54356 0.7 0.568944
Target:  5'- uGG-GGGCcuuuuucggcgGGGAGGACAGcacgguGGACAGGg -3'
miRNA:   3'- cCCaCCUG-----------CCCUCCUGUCu-----CCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 115 0.69 0.599461
Target:  5'- uGGGgGGAgUGGGGGGAUcugguuugGGAGGAguGGg -3'
miRNA:   3'- -CCCaCCU-GCCCUCCUG--------UCUCCUguCU- -5'
27024 5' -57.8 NC_005832.1 + 36057 0.69 0.599461
Target:  5'- gGGGUGGGcCGGGuGGACGcuccuGGGCuGGAc -3'
miRNA:   3'- -CCCACCU-GCCCuCCUGUcu---CCUG-UCU- -5'
27024 5' -57.8 NC_005832.1 + 94366 0.68 0.681335
Target:  5'- aGGG-GaGACGGGuGGACugcguGAGGACc-- -3'
miRNA:   3'- -CCCaC-CUGCCCuCCUGu----CUCCUGucu -5'
27024 5' -57.8 NC_005832.1 + 6225 0.67 0.689451
Target:  5'- aGGcaGGccgcgagcuccuCGGGAGGGCAGGGGaugGCAGAg -3'
miRNA:   3'- -CCcaCCu-----------GCCCUCCUGUCUCC---UGUCU- -5'
27024 5' -57.8 NC_005832.1 + 2663 0.67 0.701567
Target:  5'- gGGGUGGGUGuGGaAGGACAcGAGGccguCGGGg -3'
miRNA:   3'- -CCCACCUGC-CC-UCCUGU-CUCCu---GUCU- -5'
27024 5' -57.8 NC_005832.1 + 92137 0.67 0.73145
Target:  5'- aGGUGGGagaguuuuGGAGGGCGGuggcagacAGGAUAGAg -3'
miRNA:   3'- cCCACCUgc------CCUCCUGUC--------UCCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 66868 0.67 0.740275
Target:  5'- aGGG-GGuCGGGAacgacgaGGAUAGuguccaGGGACAGGu -3'
miRNA:   3'- -CCCaCCuGCCCU-------CCUGUC------UCCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 10791 0.66 0.750956
Target:  5'- aGGaGGugGGGAucGGcuGCGGAGGcCAGGa -3'
miRNA:   3'- cCCaCCugCCCU--CC--UGUCUCCuGUCU- -5'
27024 5' -57.8 NC_005832.1 + 67466 0.68 0.640453
Target:  5'- cGGUGGcgggucUGGGGGGAgCGgucuuGAGGACGGAa -3'
miRNA:   3'- cCCACCu-----GCCCUCCU-GU-----CUCCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 56021 0.69 0.599461
Target:  5'- aGGGgaacaaucucUGGucaucagaACGGGAGGACAGAcuacugggGGACGGu -3'
miRNA:   3'- -CCC----------ACC--------UGCCCUCCUGUCU--------CCUGUCu -5'
27024 5' -57.8 NC_005832.1 + 9307 0.69 0.590275
Target:  5'- cGGUGGGCaGGAGGugcguggacugggauCAGAGGACc-- -3'
miRNA:   3'- cCCACCUGcCCUCCu--------------GUCUCCUGucu -5'
27024 5' -57.8 NC_005832.1 + 9898 0.7 0.538827
Target:  5'- uGGGgGGACGGcGcuguacucAGGGCGGAGGgagGCAGGc -3'
miRNA:   3'- -CCCaCCUGCC-C--------UCCUGUCUCC---UGUCU- -5'
27024 5' -57.8 NC_005832.1 + 21133 0.7 0.519053
Target:  5'- aGGccGGCGGGAgcugGGAUccuGGAGGACAGAg -3'
miRNA:   3'- cCCacCUGCCCU----CCUG---UCUCCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 66112 0.72 0.431517
Target:  5'- cGGGaGGACGGGaAGGgaGCAGgaccaccgaucccaGGGACAGGu -3'
miRNA:   3'- -CCCaCCUGCCC-UCC--UGUC--------------UCCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 39263 0.73 0.407747
Target:  5'- gGGGaUGGGCGGGAucuGGCGGAGGcuCGGGa -3'
miRNA:   3'- -CCC-ACCUGCCCUc--CUGUCUCCu-GUCU- -5'
27024 5' -57.8 NC_005832.1 + 90553 0.75 0.284197
Target:  5'- gGGGUgccugagGGACGGGAGGcCcGAGGACAa- -3'
miRNA:   3'- -CCCA-------CCUGCCCUCCuGuCUCCUGUcu -5'
27024 5' -57.8 NC_005832.1 + 80802 0.66 0.783112
Target:  5'- gGGGUccucguaGACGGGAGGACcgccgucggaccaagAGGGGuuGGGg -3'
miRNA:   3'- -CCCAc------CUGCCCUCCUG---------------UCUCCugUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.