Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27026 | 3' | -59.7 | NC_005832.1 | + | 32413 | 0.76 | 0.203946 |
Target: 5'- aGGACcaucaacgucaACGGGACCGCUccagagGCCGCG-AGGAg -3' miRNA: 3'- -CCUG-----------UGUCCUGGCGG------CGGCGCaUCCU- -5' |
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27026 | 3' | -59.7 | NC_005832.1 | + | 37948 | 0.65 | 0.714387 |
Target: 5'- aGGCGugcCAGGGCCGUaccccauCGCCacCGUGGGAg -3' miRNA: 3'- cCUGU---GUCCUGGCG-------GCGGc-GCAUCCU- -5' |
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27026 | 3' | -59.7 | NC_005832.1 | + | 65581 | 0.66 | 0.705495 |
Target: 5'- ---gGCAGGACCcugcCCGCCGgG-GGGAg -3' miRNA: 3'- ccugUGUCCUGGc---GGCGGCgCaUCCU- -5' |
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27026 | 3' | -59.7 | NC_005832.1 | + | 60160 | 0.66 | 0.698545 |
Target: 5'- cGGACguagcuccccucaACAGGucuaugugguuccugACUGCCGCCGCGauaccccauGGAg -3' miRNA: 3'- -CCUG-------------UGUCC---------------UGGCGGCGGCGCau-------CCU- -5' |
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27026 | 3' | -59.7 | NC_005832.1 | + | 66122 | 0.66 | 0.675535 |
Target: 5'- cGACGCAGagugugaaaaGAUUGCCGCgGCGggaauGGAg -3' miRNA: 3'- cCUGUGUC----------CUGGCGGCGgCGCau---CCU- -5' |
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27026 | 3' | -59.7 | NC_005832.1 | + | 35746 | 0.66 | 0.675535 |
Target: 5'- aGACG-GGGGCUGCUGCUGCuUGGGu -3' miRNA: 3'- cCUGUgUCCUGGCGGCGGCGcAUCCu -5' |
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27026 | 3' | -59.7 | NC_005832.1 | + | 47403 | 0.67 | 0.655374 |
Target: 5'- cGGugACGGGAUCcuuGuuGCUGCccAGGAg -3' miRNA: 3'- -CCugUGUCCUGG---CggCGGCGcaUCCU- -5' |
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27026 | 3' | -59.7 | NC_005832.1 | + | 10517 | 0.68 | 0.593695 |
Target: 5'- aGGgACAGG-CCGCUGCCGUugacguacucgcaGUAGGc -3' miRNA: 3'- cCUgUGUCCuGGCGGCGGCG-------------CAUCCu -5' |
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27026 | 3' | -59.7 | NC_005832.1 | + | 97112 | 0.68 | 0.544801 |
Target: 5'- uGGA-GCAGG-CCGCCGCgGUGgcccugAGGGc -3' miRNA: 3'- -CCUgUGUCCuGGCGGCGgCGCa-----UCCU- -5' |
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27026 | 3' | -59.7 | NC_005832.1 | + | 103973 | 0.76 | 0.214154 |
Target: 5'- uGGugGCccugAGGGCCGCCGCggaCGCcGUGGGGg -3' miRNA: 3'- -CCugUG----UCCUGGCGGCG---GCG-CAUCCU- -5' |
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27026 | 3' | -59.7 | NC_005832.1 | + | 29737 | 0.73 | 0.291542 |
Target: 5'- uGGACucCAGGACgGCUGCCGUGUGc-- -3' miRNA: 3'- -CCUGu-GUCCUGgCGGCGGCGCAUccu -5' |
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27026 | 3' | -59.7 | NC_005832.1 | + | 55835 | 0.72 | 0.349203 |
Target: 5'- cGGu--CAGGGCCGCCGUgGUgGUGGGGu -3' miRNA: 3'- -CCuguGUCCUGGCGGCGgCG-CAUCCU- -5' |
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27026 | 3' | -59.7 | NC_005832.1 | + | 95554 | 0.7 | 0.456263 |
Target: 5'- uGGACACGGGcuagccuccgcgGCCGCUGCCG-GUGacugucucauugccGGAg -3' miRNA: 3'- -CCUGUGUCC------------UGGCGGCGGCgCAU--------------CCU- -5' |
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27026 | 3' | -59.7 | NC_005832.1 | + | 72061 | 0.69 | 0.486867 |
Target: 5'- cGugAUAGuGGCgGCCGUCGUgGUGGGAg -3' miRNA: 3'- cCugUGUC-CUGgCGGCGGCG-CAUCCU- -5' |
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27026 | 3' | -59.7 | NC_005832.1 | + | 55991 | 0.69 | 0.534971 |
Target: 5'- aGACACGGGGCCcgcguaGCCGUaCGCGgcccuGGGu -3' miRNA: 3'- cCUGUGUCCUGG------CGGCG-GCGCau---CCU- -5' |
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27026 | 3' | -59.7 | NC_005832.1 | + | 14516 | 0.66 | 0.698545 |
Target: 5'- cGACGCAuacugcgagccguguGGACUGCgcaacaaUGUCGCGUAGGc -3' miRNA: 3'- cCUGUGU---------------CCUGGCG-------GCGGCGCAUCCu -5' |
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27026 | 3' | -59.7 | NC_005832.1 | + | 71389 | 0.8 | 0.117053 |
Target: 5'- uGGccACGCAGacACCGCCGCgGCGUAGGAa -3' miRNA: 3'- -CC--UGUGUCc-UGGCGGCGgCGCAUCCU- -5' |
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27026 | 3' | -59.7 | NC_005832.1 | + | 52849 | 0.75 | 0.229733 |
Target: 5'- aGACcuuuGCGGcGGCCGCCGCCGCucacucuGUGGGGg -3' miRNA: 3'- cCUG----UGUC-CUGGCGGCGGCG-------CAUCCU- -5' |
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27026 | 3' | -59.7 | NC_005832.1 | + | 41577 | 0.73 | 0.305226 |
Target: 5'- aGGCugAGGccgaggaggagGCCGCCGCCGUcaGGGAg -3' miRNA: 3'- cCUGugUCC-----------UGGCGGCGGCGcaUCCU- -5' |
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27026 | 3' | -59.7 | NC_005832.1 | + | 67564 | 0.71 | 0.414541 |
Target: 5'- --cUugAGGugaGCCGCCGCCGCGgcccacucUGGGAa -3' miRNA: 3'- ccuGugUCC---UGGCGGCGGCGC--------AUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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