miRNA display CGI

Results 21 - 30 of 30 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
27026	3'	-59.7	NC_005832.1	+	1272	0.66	0.685568
	Target:  5'- uGGAUAUAGaGGCCGCCGaCCuguccuCGcGGGAc -3' miRNA:   3'- -CCUGUGUC-CUGGCGGC-GGc-----GCaUCCU- -5'
27026	3'	-59.7	NC_005832.1	+	36020	0.69	0.486867
	Target:  5'- cGGGCccuCAGGGCCagagcuCCuaCGCGUGGGAu -3' miRNA:   3'- -CCUGu--GUCCUGGc-----GGcgGCGCAUCCU- -5'
27026	3'	-59.7	NC_005832.1	+	97163	0.69	0.486867
	Target:  5'- gGGAgGcCAGGuCCGCCaCCaCGUAGGAc -3' miRNA:   3'- -CCUgU-GUCCuGGCGGcGGcGCAUCCU- -5'
27026	3'	-59.7	NC_005832.1	+	20742	0.7	0.431128
	Target:  5'- uGGC-CAGGGCUGuaGCCGCGUcuccguuGGGAg -3' miRNA:   3'- cCUGuGUCCUGGCggCGGCGCA-------UCCU- -5'
27026	3'	-59.7	NC_005832.1	+	67564	0.71	0.414541
	Target:  5'- --cUugAGGugaGCCGCCGCCGCGgcccacucUGGGAa -3' miRNA:   3'- ccuGugUCC---UGGCGGCGGCGC--------AUCCU- -5'
27026	3'	-59.7	NC_005832.1	+	41577	0.73	0.305226
	Target:  5'- aGGCugAGGccgaggaggagGCCGCCGCCGUcaGGGAg -3' miRNA:   3'- cCUGugUCC-----------UGGCGGCGGCGcaUCCU- -5'
27026	3'	-59.7	NC_005832.1	+	52849	0.75	0.229733
	Target:  5'- aGACcuuuGCGGcGGCCGCCGCCGCucacucuGUGGGGg -3' miRNA:   3'- cCUG----UGUC-CUGGCGGCGGCG-------CAUCCU- -5'
27026	3'	-59.7	NC_005832.1	+	71389	0.8	0.117053
	Target:  5'- uGGccACGCAGacACCGCCGCgGCGUAGGAa -3' miRNA:   3'- -CC--UGUGUCc-UGGCGGCGgCGCAUCCU- -5'
27026	3'	-59.7	NC_005832.1	+	7416	1.1	0.000808
	Target:  5'- cGGACACAGGACCGCCGCCGCGUAGGAc -3' miRNA:   3'- -CCUGUGUCCUGGCGGCGGCGCAUCCU- -5'
27026	3'	-59.7	NC_005832.1	+	14516	0.66	0.698545
	Target:  5'- cGACGCAuacugcgagccguguGGACUGCgcaacaaUGUCGCGUAGGc -3' miRNA:   3'- cCUGUGU---------------CCUGGCG-------GCGGCGCAUCCu -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home