miRNA display CGI

Results 21 - 30 of 30 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
27026	3'	-59.7	NC_005832.1	+	20742	0.7	0.431128
	Target:  5'- uGGC-CAGGGCUGuaGCCGCGUcuccguuGGGAg -3' miRNA:   3'- cCUGuGUCCUGGCggCGGCGCA-------UCCU- -5'
27026	3'	-59.7	NC_005832.1	+	67564	0.71	0.414541
	Target:  5'- --cUugAGGugaGCCGCCGCCGCGgcccacucUGGGAa -3' miRNA:   3'- ccuGugUCC---UGGCGGCGGCGC--------AUCCU- -5'
27026	3'	-59.7	NC_005832.1	+	55835	0.72	0.349203
	Target:  5'- cGGu--CAGGGCCGCCGUgGUgGUGGGGu -3' miRNA:   3'- -CCuguGUCCUGGCGGCGgCG-CAUCCU- -5'
27026	3'	-59.7	NC_005832.1	+	41577	0.73	0.305226
	Target:  5'- aGGCugAGGccgaggaggagGCCGCCGCCGUcaGGGAg -3' miRNA:   3'- cCUGugUCC-----------UGGCGGCGGCGcaUCCU- -5'
27026	3'	-59.7	NC_005832.1	+	29737	0.73	0.291542
	Target:  5'- uGGACucCAGGACgGCUGCCGUGUGc-- -3' miRNA:   3'- -CCUGu-GUCCUGgCGGCGGCGCAUccu -5'
27026	3'	-59.7	NC_005832.1	+	52849	0.75	0.229733
	Target:  5'- aGACcuuuGCGGcGGCCGCCGCCGCucacucuGUGGGGg -3' miRNA:   3'- cCUG----UGUC-CUGGCGGCGGCG-------CAUCCU- -5'
27026	3'	-59.7	NC_005832.1	+	103973	0.76	0.214154
	Target:  5'- uGGugGCccugAGGGCCGCCGCggaCGCcGUGGGGg -3' miRNA:   3'- -CCugUG----UCCUGGCGGCG---GCG-CAUCCU- -5'
27026	3'	-59.7	NC_005832.1	+	32413	0.76	0.203946
	Target:  5'- aGGACcaucaacgucaACGGGACCGCUccagagGCCGCG-AGGAg -3' miRNA:   3'- -CCUG-----------UGUCCUGGCGG------CGGCGCaUCCU- -5'
27026	3'	-59.7	NC_005832.1	+	71389	0.8	0.117053
	Target:  5'- uGGccACGCAGacACCGCCGCgGCGUAGGAa -3' miRNA:   3'- -CC--UGUGUCc-UGGCGGCGgCGCAUCCU- -5'
27026	3'	-59.7	NC_005832.1	+	7416	1.1	0.000808
	Target:  5'- cGGACACAGGACCGCCGCCGCGUAGGAc -3' miRNA:   3'- -CCUGUGUCCUGGCGGCGGCGCAUCCU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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