miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27027 3' -53.5 NC_005832.1 + 9504 1.11 0.00275
Target:  5'- aGCAAACGCCAAGGUGUACGACGGCCGu -3'
miRNA:   3'- -CGUUUGCGGUUCCACAUGCUGCCGGC- -5'
27027 3' -53.5 NC_005832.1 + 50425 0.78 0.368209
Target:  5'- gGCuuGCGUCAAGGUGUgcagggacACGGCGGCa- -3'
miRNA:   3'- -CGuuUGCGGUUCCACA--------UGCUGCCGgc -5'
27027 3' -53.5 NC_005832.1 + 70953 0.76 0.438933
Target:  5'- cGCGGACGUCAGGGUGUuugagaGgGACGaGCCc -3'
miRNA:   3'- -CGUUUGCGGUUCCACA------UgCUGC-CGGc -5'
27027 3' -53.5 NC_005832.1 + 56292 0.75 0.496762
Target:  5'- --cGACGUCAAGG-GUACcACGGCCGu -3'
miRNA:   3'- cguUUGCGGUUCCaCAUGcUGCCGGC- -5'
27027 3' -53.5 NC_005832.1 + 9942 0.74 0.578623
Target:  5'- cGCuguGgGCCGAGGUG-ACGACGGgCa -3'
miRNA:   3'- -CGuu-UgCGGUUCCACaUGCUGCCgGc -5'
27027 3' -53.5 NC_005832.1 + 97633 0.72 0.684001
Target:  5'- aGCAGGCugGagAAGGUGUccGCGGCGGUCGa -3'
miRNA:   3'- -CGUUUG--CggUUCCACA--UGCUGCCGGC- -5'
27027 3' -53.5 NC_005832.1 + 31873 0.71 0.724364
Target:  5'- aGCAAgggaugcACGCCAGGGU----GAUGGCCGu -3'
miRNA:   3'- -CGUU-------UGCGGUUCCAcaugCUGCCGGC- -5'
27027 3' -53.5 NC_005832.1 + 63003 0.71 0.749597
Target:  5'- cCAGugGUCAAGGaaaagugcaggguucUGUGCGACauGGCCa -3'
miRNA:   3'- cGUUugCGGUUCC---------------ACAUGCUG--CCGGc -5'
27027 3' -53.5 NC_005832.1 + 67008 0.7 0.764417
Target:  5'- cCAAACGUCccgcugcGAGGgcccugGCGGCGGCCGu -3'
miRNA:   3'- cGUUUGCGG-------UUCCaca---UGCUGCCGGC- -5'
27027 3' -53.5 NC_005832.1 + 37556 0.7 0.765395
Target:  5'- aCAua-GCCGGGGUGgGCGA-GGCCGu -3'
miRNA:   3'- cGUuugCGGUUCCACaUGCUgCCGGC- -5'
27027 3' -53.5 NC_005832.1 + 86506 0.7 0.775107
Target:  5'- uGCAua-GCCGcu-UGUGCGGCGGCCa -3'
miRNA:   3'- -CGUuugCGGUuccACAUGCUGCCGGc -5'
27027 3' -53.5 NC_005832.1 + 58210 0.7 0.784683
Target:  5'- cCAAACGUUAGGGcGgcCGACGGUCu -3'
miRNA:   3'- cGUUUGCGGUUCCaCauGCUGCCGGc -5'
27027 3' -53.5 NC_005832.1 + 41468 0.7 0.794112
Target:  5'- gGCAuuGCGUCGAGGcucacucagAUGACGGCCa -3'
miRNA:   3'- -CGUu-UGCGGUUCCaca------UGCUGCCGGc -5'
27027 3' -53.5 NC_005832.1 + 20843 0.69 0.812493
Target:  5'- uGCcuuCGCCGAGGUGUAcucugacccCGACauGGUCGa -3'
miRNA:   3'- -CGuuuGCGGUUCCACAU---------GCUG--CCGGC- -5'
27027 3' -53.5 NC_005832.1 + 16707 0.69 0.830175
Target:  5'- -aGAGCGCCAGccuGGUGUACGAaaacaccacaaGGCUc -3'
miRNA:   3'- cgUUUGCGGUU---CCACAUGCUg----------CCGGc -5'
27027 3' -53.5 NC_005832.1 + 26615 0.69 0.838732
Target:  5'- -gAGACGCggccuuUAAGGUG-GCGAgGGCCGc -3'
miRNA:   3'- cgUUUGCG------GUUCCACaUGCUgCCGGC- -5'
27027 3' -53.5 NC_005832.1 + 78398 0.68 0.847089
Target:  5'- uGUGGACGUCAccAGG-GUAaagGACGGCCu -3'
miRNA:   3'- -CGUUUGCGGU--UCCaCAUg--CUGCCGGc -5'
27027 3' -53.5 NC_005832.1 + 78329 0.68 0.854432
Target:  5'- ----cCGCCAcaggggcaugaugGGGUucGCGGCGGCCGu -3'
miRNA:   3'- cguuuGCGGU-------------UCCAcaUGCUGCCGGC- -5'
27027 3' -53.5 NC_005832.1 + 95523 0.68 0.86317
Target:  5'- cCAAACaGCUucGAGGUGUcCGgaGCGGCCa -3'
miRNA:   3'- cGUUUG-CGG--UUCCACAuGC--UGCCGGc -5'
27027 3' -53.5 NC_005832.1 + 36525 0.68 0.86317
Target:  5'- gGCGuACGCCAGGGc---CGGgGGCCa -3'
miRNA:   3'- -CGUuUGCGGUUCCacauGCUgCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.