Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27027 | 3' | -53.5 | NC_005832.1 | + | 70953 | 0.76 | 0.438933 |
Target: 5'- cGCGGACGUCAGGGUGUuugagaGgGACGaGCCc -3' miRNA: 3'- -CGUUUGCGGUUCCACA------UgCUGC-CGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 96781 | 0.68 | 0.88561 |
Target: 5'- -----gGCCAAGGUG---GACGGCCu -3' miRNA: 3'- cguuugCGGUUCCACaugCUGCCGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 94761 | 0.67 | 0.899383 |
Target: 5'- uGCAGGC-CCAggAGGaucUGcGCGAgGGCCGa -3' miRNA: 3'- -CGUUUGcGGU--UCC---ACaUGCUgCCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 79877 | 0.67 | 0.912167 |
Target: 5'- aGCAG--GCCGAGGag-AgGGCGGCCa -3' miRNA: 3'- -CGUUugCGGUUCCacaUgCUGCCGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 52448 | 0.66 | 0.923941 |
Target: 5'- aGCAgGACcCCAGGGUGaggguucucACGuCGGCCGc -3' miRNA: 3'- -CGU-UUGcGGUUCCACa--------UGCuGCCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 27931 | 0.66 | 0.934694 |
Target: 5'- cGCGGugGUCAAGGggcaaaggGUcccgccggaGACGGCCu -3' miRNA: 3'- -CGUUugCGGUUCCa-------CAug-------CUGCCGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 103992 | 0.66 | 0.934694 |
Target: 5'- cGCGGACGCCGugGGG-GUA-GACaacauGGCCu -3' miRNA: 3'- -CGUUUGCGGU--UCCaCAUgCUG-----CCGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 64241 | 0.66 | 0.939689 |
Target: 5'- cCGAACGCgGGGuUGUGgcugugacugUGAUGGCCGg -3' miRNA: 3'- cGUUUGCGgUUCcACAU----------GCUGCCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 52028 | 0.66 | 0.944431 |
Target: 5'- -gGGACGCgGGGGguauuucugaccUGUcuGCGAUGGCCc -3' miRNA: 3'- cgUUUGCGgUUCC------------ACA--UGCUGCCGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 56822 | 0.68 | 0.88561 |
Target: 5'- uUggGCGCUcuGaGUG-GCGACGGCCu -3' miRNA: 3'- cGuuUGCGGuuC-CACaUGCUGCCGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 36525 | 0.68 | 0.86317 |
Target: 5'- gGCGuACGCCAGGGc---CGGgGGCCa -3' miRNA: 3'- -CGUuUGCGGUUCCacauGCUgCCGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 97633 | 0.72 | 0.684001 |
Target: 5'- aGCAGGCugGagAAGGUGUccGCGGCGGUCGa -3' miRNA: 3'- -CGUUUG--CggUUCCACA--UGCUGCCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 63003 | 0.71 | 0.749597 |
Target: 5'- cCAGugGUCAAGGaaaagugcaggguucUGUGCGACauGGCCa -3' miRNA: 3'- cGUUugCGGUUCC---------------ACAUGCUG--CCGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 67008 | 0.7 | 0.764417 |
Target: 5'- cCAAACGUCccgcugcGAGGgcccugGCGGCGGCCGu -3' miRNA: 3'- cGUUUGCGG-------UUCCaca---UGCUGCCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 86506 | 0.7 | 0.775107 |
Target: 5'- uGCAua-GCCGcu-UGUGCGGCGGCCa -3' miRNA: 3'- -CGUuugCGGUuccACAUGCUGCCGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 58210 | 0.7 | 0.784683 |
Target: 5'- cCAAACGUUAGGGcGgcCGACGGUCu -3' miRNA: 3'- cGUUUGCGGUUCCaCauGCUGCCGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 20843 | 0.69 | 0.812493 |
Target: 5'- uGCcuuCGCCGAGGUGUAcucugacccCGACauGGUCGa -3' miRNA: 3'- -CGuuuGCGGUUCCACAU---------GCUG--CCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 78398 | 0.68 | 0.847089 |
Target: 5'- uGUGGACGUCAccAGG-GUAaagGACGGCCu -3' miRNA: 3'- -CGUUUGCGGU--UCCaCAUg--CUGCCGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 78329 | 0.68 | 0.854432 |
Target: 5'- ----cCGCCAcaggggcaugaugGGGUucGCGGCGGCCGu -3' miRNA: 3'- cguuuGCGGU-------------UCCAcaUGCUGCCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 4317 | 0.66 | 0.939689 |
Target: 5'- aGCGGAUGCgAgaAGGUGcACGuCGGCa- -3' miRNA: 3'- -CGUUUGCGgU--UCCACaUGCuGCCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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