Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27027 | 3' | -53.5 | NC_005832.1 | + | 56292 | 0.75 | 0.496762 |
Target: 5'- --cGACGUCAAGG-GUACcACGGCCGu -3' miRNA: 3'- cguUUGCGGUUCCaCAUGcUGCCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 9504 | 1.11 | 0.00275 |
Target: 5'- aGCAAACGCCAAGGUGUACGACGGCCGu -3' miRNA: 3'- -CGUUUGCGGUUCCACAUGCUGCCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 50714 | 0.67 | 0.918181 |
Target: 5'- -gAGAgGCUGAGGcUGUACGAC-GCUGg -3' miRNA: 3'- cgUUUgCGGUUCC-ACAUGCUGcCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 95523 | 0.68 | 0.86317 |
Target: 5'- cCAAACaGCUucGAGGUGUcCGgaGCGGCCa -3' miRNA: 3'- cGUUUG-CGG--UUCCACAuGC--UGCCGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 16707 | 0.69 | 0.830175 |
Target: 5'- -aGAGCGCCAGccuGGUGUACGAaaacaccacaaGGCUc -3' miRNA: 3'- cgUUUGCGGUU---CCACAUGCUg----------CCGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 41468 | 0.7 | 0.794112 |
Target: 5'- gGCAuuGCGUCGAGGcucacucagAUGACGGCCa -3' miRNA: 3'- -CGUu-UGCGGUUCCaca------UGCUGCCGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 16495 | 0.66 | 0.929445 |
Target: 5'- ----cCGCUGAGGccaccGCGGCGGCCGc -3' miRNA: 3'- cguuuGCGGUUCCaca--UGCUGCCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 10774 | 0.67 | 0.918181 |
Target: 5'- uGCGGAgGCCAggaacccgagucAGGUuaggAgGAUGGCCGg -3' miRNA: 3'- -CGUUUgCGGU------------UCCAca--UgCUGCCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 26615 | 0.69 | 0.838732 |
Target: 5'- -gAGACGCggccuuUAAGGUG-GCGAgGGCCGc -3' miRNA: 3'- cgUUUGCG------GUUCCACaUGCUgCCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 37556 | 0.7 | 0.765395 |
Target: 5'- aCAua-GCCGGGGUGgGCGA-GGCCGu -3' miRNA: 3'- cGUuugCGGUUCCACaUGCUgCCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 9942 | 0.74 | 0.578623 |
Target: 5'- cGCuguGgGCCGAGGUG-ACGACGGgCa -3' miRNA: 3'- -CGuu-UgCGGUUCCACaUGCUGCCgGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 58555 | 0.66 | 0.934694 |
Target: 5'- cGCAGAUGUaCGGGGUGUAgGuACccuugGGCCa -3' miRNA: 3'- -CGUUUGCG-GUUCCACAUgC-UG-----CCGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 31873 | 0.71 | 0.724364 |
Target: 5'- aGCAAgggaugcACGCCAGGGU----GAUGGCCGu -3' miRNA: 3'- -CGUU-------UGCGGUUCCAcaugCUGCCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 20852 | 0.67 | 0.918181 |
Target: 5'- gGCucuaGCCAccGUGUACGccaggGCGGCCu -3' miRNA: 3'- -CGuuugCGGUucCACAUGC-----UGCCGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 4317 | 0.66 | 0.939689 |
Target: 5'- aGCGGAUGCgAgaAGGUGcACGuCGGCa- -3' miRNA: 3'- -CGUUUGCGgU--UCCACaUGCuGCCGgc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 50425 | 0.78 | 0.368209 |
Target: 5'- gGCuuGCGUCAAGGUGUgcagggacACGGCGGCa- -3' miRNA: 3'- -CGuuUGCGGUUCCACA--------UGCUGCCGgc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 52448 | 0.66 | 0.923941 |
Target: 5'- aGCAgGACcCCAGGGUGaggguucucACGuCGGCCGc -3' miRNA: 3'- -CGU-UUGcGGUUCCACa--------UGCuGCCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 79877 | 0.67 | 0.912167 |
Target: 5'- aGCAG--GCCGAGGag-AgGGCGGCCa -3' miRNA: 3'- -CGUUugCGGUUCCacaUgCUGCCGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 94761 | 0.67 | 0.899383 |
Target: 5'- uGCAGGC-CCAggAGGaucUGcGCGAgGGCCGa -3' miRNA: 3'- -CGUUUGcGGU--UCC---ACaUGCUgCCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 96781 | 0.68 | 0.88561 |
Target: 5'- -----gGCCAAGGUG---GACGGCCu -3' miRNA: 3'- cguuugCGGUUCCACaugCUGCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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