miRNA display CGI


Results 61 - 67 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27028 5' -56.5 NC_005832.1 + 96747 0.74 0.407786
Target:  5'- -aGACGGC-AGACUCUC-ACGgCGUCa -3'
miRNA:   3'- ggCUGCCGuUCUGGGAGuUGCgGCAG- -5'
27028 5' -56.5 NC_005832.1 + 28075 0.74 0.406915
Target:  5'- gCCGucucCGGCGGGACCCUuugccaccuugacCAccGCGUCGUCg -3'
miRNA:   3'- -GGCu---GCCGUUCUGGGA-------------GU--UGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 7535 0.74 0.399132
Target:  5'- cCCGAgGGCAcGGACCC-CG-CGUCGUCc -3'
miRNA:   3'- -GGCUgCCGU-UCUGGGaGUuGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 95842 0.78 0.240146
Target:  5'- gCCGcaGCGGgaAAGACUCUCGccGCGCCGUCa -3'
miRNA:   3'- -GGC--UGCCg-UUCUGGGAGU--UGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 53977 0.79 0.20198
Target:  5'- cCCGGCuucGGCAAGACCUUCAugGCCc-- -3'
miRNA:   3'- -GGCUG---CCGUUCUGGGAGUugCGGcag -5'
27028 5' -56.5 NC_005832.1 + 50400 0.81 0.160741
Target:  5'- aCGGCGGCAGagagguGGCCCUCGACGCCcgacucugcuugGUCa -3'
miRNA:   3'- gGCUGCCGUU------CUGGGAGUUGCGG------------CAG- -5'
27028 5' -56.5 NC_005832.1 + 9613 1.12 0.001286
Target:  5'- gCCGACGGCAAGACCCUCAACGCCGUCa -3'
miRNA:   3'- -GGCUGCCGUUCUGGGAGUUGCGGCAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.