miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27028 5' -56.5 NC_005832.1 + 9613 1.12 0.001286
Target:  5'- gCCGACGGCAAGACCCUCAACGCCGUCa -3'
miRNA:   3'- -GGCUGCCGUUCUGGGAGUUGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 50400 0.81 0.160741
Target:  5'- aCGGCGGCAGagagguGGCCCUCGACGCCcgacucugcuugGUCa -3'
miRNA:   3'- gGCUGCCGUU------CUGGGAGUUGCGG------------CAG- -5'
27028 5' -56.5 NC_005832.1 + 53977 0.79 0.20198
Target:  5'- cCCGGCuucGGCAAGACCUUCAugGCCc-- -3'
miRNA:   3'- -GGCUG---CCGUUCUGGGAGUugCGGcag -5'
27028 5' -56.5 NC_005832.1 + 95842 0.78 0.240146
Target:  5'- gCCGcaGCGGgaAAGACUCUCGccGCGCCGUCa -3'
miRNA:   3'- -GGC--UGCCg-UUCUGGGAGU--UGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 7535 0.74 0.399132
Target:  5'- cCCGAgGGCAcGGACCC-CG-CGUCGUCc -3'
miRNA:   3'- -GGCUgCCGU-UCUGGGaGUuGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 28075 0.74 0.406915
Target:  5'- gCCGucucCGGCGGGACCCUuugccaccuugacCAccGCGUCGUCg -3'
miRNA:   3'- -GGCu---GCCGUUCUGGGA-------------GU--UGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 96747 0.74 0.407786
Target:  5'- -aGACGGC-AGACUCUC-ACGgCGUCa -3'
miRNA:   3'- ggCUGCCGuUCUGGGAGuUGCgGCAG- -5'
27028 5' -56.5 NC_005832.1 + 56160 0.74 0.407786
Target:  5'- uUGACGGCcguGGuACCCUUGACGUCGUa -3'
miRNA:   3'- gGCUGCCGu--UC-UGGGAGUUGCGGCAg -5'
27028 5' -56.5 NC_005832.1 + 2276 0.73 0.443541
Target:  5'- cCCGGUGGCGuugcuGGCCgUCuccAACGCCGUCa -3'
miRNA:   3'- -GGCUGCCGUu----CUGGgAG---UUGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 93768 0.72 0.480995
Target:  5'- aCGGCGGCAaacccGGcucacACCCUCcACGCCGg- -3'
miRNA:   3'- gGCUGCCGU-----UC-----UGGGAGuUGCGGCag -5'
27028 5' -56.5 NC_005832.1 + 65466 0.72 0.490599
Target:  5'- aCCGugGGCGagaggGGGCCCUC-ACGuccCCGUg -3'
miRNA:   3'- -GGCugCCGU-----UCUGGGAGuUGC---GGCAg -5'
27028 5' -56.5 NC_005832.1 + 75182 0.72 0.490599
Target:  5'- aCGuAUGGUcgacGAGACCCUCGAUGgUGUCg -3'
miRNA:   3'- gGC-UGCCG----UUCUGGGAGUUGCgGCAG- -5'
27028 5' -56.5 NC_005832.1 + 41307 0.72 0.500291
Target:  5'- uCCGACaGGaGAGcguCCCUgAugGCCGUCa -3'
miRNA:   3'- -GGCUG-CCgUUCu--GGGAgUugCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 56145 0.71 0.549906
Target:  5'- uCCGGgGGCAAGACCC--AGgGCCG-Cg -3'
miRNA:   3'- -GGCUgCCGUUCUGGGagUUgCGGCaG- -5'
27028 5' -56.5 NC_005832.1 + 20809 0.71 0.570191
Target:  5'- cCCGAUccggaaGGCAGGGCCCUCAccaGgGCgGUa -3'
miRNA:   3'- -GGCUG------CCGUUCUGGGAGU---UgCGgCAg -5'
27028 5' -56.5 NC_005832.1 + 39499 0.71 0.574272
Target:  5'- gCCGAUcccucugcuccccugGGCcccuGGGCCCUgGuCGCCGUCg -3'
miRNA:   3'- -GGCUG---------------CCGu---UCUGGGAgUuGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 72745 0.7 0.600936
Target:  5'- gCGACucCAuucGGACCCUUcACGCCGUCc -3'
miRNA:   3'- gGCUGccGU---UCUGGGAGuUGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 54811 0.7 0.600936
Target:  5'- gCCGACGGgGGGACCgUCcugGACcCCGUg -3'
miRNA:   3'- -GGCUGCCgUUCUGGgAG---UUGcGGCAg -5'
27028 5' -56.5 NC_005832.1 + 12895 0.7 0.621561
Target:  5'- cCUGGCGuGCGGGGCCCUgcACGgCGUg -3'
miRNA:   3'- -GGCUGC-CGUUCUGGGAguUGCgGCAg -5'
27028 5' -56.5 NC_005832.1 + 44535 0.7 0.63189
Target:  5'- gCGGCgugcaagcugGGCAAGACCUaCGACGCCa-- -3'
miRNA:   3'- gGCUG----------CCGUUCUGGGaGUUGCGGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.