miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27028 5' -56.5 NC_005832.1 + 72962 0.66 0.826642
Target:  5'- cCCGACGGacccCAGGGUCCUCGGgGCCc-- -3'
miRNA:   3'- -GGCUGCC----GUUCUGGGAGUUgCGGcag -5'
27028 5' -56.5 NC_005832.1 + 33475 0.69 0.673123
Target:  5'- cCCG-CGGC--GACCCUCAggggacucgACGCCaagGUCa -3'
miRNA:   3'- -GGCuGCCGuuCUGGGAGU---------UGCGG---CAG- -5'
27028 5' -56.5 NC_005832.1 + 19707 0.69 0.683368
Target:  5'- uCCGAaacCGGcCAAGACCgUCAGgGggaCCGUCa -3'
miRNA:   3'- -GGCU---GCC-GUUCUGGgAGUUgC---GGCAG- -5'
27028 5' -56.5 NC_005832.1 + 59873 0.69 0.70372
Target:  5'- aCGACGGgcaGAGACCCgc-GCGaCCGUg -3'
miRNA:   3'- gGCUGCCg--UUCUGGGaguUGC-GGCAg -5'
27028 5' -56.5 NC_005832.1 + 11816 0.68 0.733762
Target:  5'- cCUGGCucuGGCcGGGCuCCUCGugauggcCGCCGUCg -3'
miRNA:   3'- -GGCUG---CCGuUCUG-GGAGUu------GCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 56947 0.68 0.733762
Target:  5'- aUCGGCGGUAAuguccuGAUCCgucacCAugGUCGUCa -3'
miRNA:   3'- -GGCUGCCGUU------CUGGGa----GUugCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 62157 0.68 0.74361
Target:  5'- aCUGACGaGCAGauGGCCCUCuAugGguaaCCGUCu -3'
miRNA:   3'- -GGCUGC-CGUU--CUGGGAG-UugC----GGCAG- -5'
27028 5' -56.5 NC_005832.1 + 94565 0.68 0.752387
Target:  5'- gCCcACGGCGGguuuaacGAgCCUCAccACGCCGUa -3'
miRNA:   3'- -GGcUGCCGUU-------CUgGGAGU--UGCGGCAg -5'
27028 5' -56.5 NC_005832.1 + 4934 0.68 0.753357
Target:  5'- -gGACGGCGAG-CCCgagaCGAUGCC-UCc -3'
miRNA:   3'- ggCUGCCGUUCuGGGa---GUUGCGGcAG- -5'
27028 5' -56.5 NC_005832.1 + 6988 0.69 0.673123
Target:  5'- aCGGCGGgCAcggcauGGACCCUCAGaggUGCUGgUCg -3'
miRNA:   3'- gGCUGCC-GU------UCUGGGAGUU---GCGGC-AG- -5'
27028 5' -56.5 NC_005832.1 + 97069 0.69 0.65254
Target:  5'- cUCGGaGGCAAGGCCCagGAgGCCcuGUCg -3'
miRNA:   3'- -GGCUgCCGUUCUGGGagUUgCGG--CAG- -5'
27028 5' -56.5 NC_005832.1 + 49188 0.7 0.639121
Target:  5'- cCCGACguGGCGuuugcGGaaaugucuauagacGCCUUCAACGCCGUg -3'
miRNA:   3'- -GGCUG--CCGU-----UC--------------UGGGAGUUGCGGCAg -5'
27028 5' -56.5 NC_005832.1 + 95842 0.78 0.240146
Target:  5'- gCCGcaGCGGgaAAGACUCUCGccGCGCCGUCa -3'
miRNA:   3'- -GGC--UGCCg-UUCUGGGAGU--UGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 96747 0.74 0.407786
Target:  5'- -aGACGGC-AGACUCUC-ACGgCGUCa -3'
miRNA:   3'- ggCUGCCGuUCUGGGAGuUGCgGCAG- -5'
27028 5' -56.5 NC_005832.1 + 56160 0.74 0.407786
Target:  5'- uUGACGGCcguGGuACCCUUGACGUCGUa -3'
miRNA:   3'- gGCUGCCGu--UC-UGGGAGUUGCGGCAg -5'
27028 5' -56.5 NC_005832.1 + 2276 0.73 0.443541
Target:  5'- cCCGGUGGCGuugcuGGCCgUCuccAACGCCGUCa -3'
miRNA:   3'- -GGCUGCCGUu----CUGGgAG---UUGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 65466 0.72 0.490599
Target:  5'- aCCGugGGCGagaggGGGCCCUC-ACGuccCCGUg -3'
miRNA:   3'- -GGCugCCGU-----UCUGGGAGuUGC---GGCAg -5'
27028 5' -56.5 NC_005832.1 + 41307 0.72 0.500291
Target:  5'- uCCGACaGGaGAGcguCCCUgAugGCCGUCa -3'
miRNA:   3'- -GGCUG-CCgUUCu--GGGAgUugCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 54811 0.7 0.600936
Target:  5'- gCCGACGGgGGGACCgUCcugGACcCCGUg -3'
miRNA:   3'- -GGCUGCCgUUCUGGgAG---UUGcGGCAg -5'
27028 5' -56.5 NC_005832.1 + 44535 0.7 0.63189
Target:  5'- gCGGCgugcaagcugGGCAAGACCUaCGACGCCa-- -3'
miRNA:   3'- gGCUG----------CCGUUCUGGGaGUUGCGGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.